Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00143
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta...    29   4.3  
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote...    28   7.6  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    28   7.6  
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    27   10.0 
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    27   10.0 
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    27   10.0 
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami...    27   10.0 
At3g08020.1 68416.m00979 PHD finger protein-related contains low...    27   10.0 

>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam PF00226: DnaJ
           domain; similar to dnaJ (GI:144832) [Clostridium
           acetobutylicum]
          Length = 207

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 223 CPRVGPASTVRNLGSLYLINGKTAVR 146
           CP  G  S + N+ S  +ING+T +R
Sbjct: 104 CPNCGQNSAMTNISSTEVINGRTFIR 129


>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 906

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 344 ESAKVENRVRSGDVTGSYIYKDGKNDLVKVRYWSDRDGFHQEDNLP 481
           ESA++++ +  G   G Y+   G N+L +  Y    D F  +DN P
Sbjct: 617 ESAEIKDNLAVGIPEGEYMDLSGTNELARCAY---NDVFTGQDNQP 659


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 63  DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 209
           D   I I    A    NS PFT   +P+ +    V+PL KYN   +  V  G
Sbjct: 242 DSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 293


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 230 EERKGNRESEDYVEEVYDASQYHGQDGLGAYAYGYQTP 343
           +++  N +   Y    Y+A    G  G GAYAYGY  P
Sbjct: 66  KDKGSNLKKLGYQSAAYNAK---GSYGKGAYAYGYYPP 100


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 230 EERKGNRESEDYVEEVYDASQYHGQDGLGAYAYGYQTP 343
           +++  N +   Y    Y+A    G  G GAYAYGY  P
Sbjct: 68  KDKGSNLKKLGYQSAAYNAK---GSYGKGAYAYGYYPP 102


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 317 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLV--KVRYWSDRD 454
           +Y  G +T  +++V  ++  G+    Y++ DG+N ++   +  WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541


>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
           protein  contains Pfam profile PF04091: Exocyst complex
           subunit Sec15-like
          Length = 771

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 233 ERKGNRESEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENR 367
           ERK N+E  D++ E+   S+  GQ  +G  +   Q  E  +++ R
Sbjct: 202 ERKVNKEFGDWLVEIRVVSRNLGQLAIGEASAARQREEELRIKQR 246


>At3g08020.1 68416.m00979 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 764

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 722 SGLAIRWATTDACCSDACG 666
           +GL++RW  +  CC DACG
Sbjct: 260 NGLSVRWFLSYTCC-DACG 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,871
Number of Sequences: 28952
Number of extensions: 323752
Number of successful extensions: 1050
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)