Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00142
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   8.0  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   8.0  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   8.0  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.0  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 135 RAITLVFSNST*RPRASLVLNSPAGSP-PTRKAERFLAAFPQICSERL 275
           R  TL  SN+   P   +   +  GSP P   A  FLA + +IC E L
Sbjct: 271 RTFTLSNSNTNYNPGTYINKEAGGGSPGPYTNATGFLAYY-EICPEIL 317


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 364 VTLEGTFAPQTGTKTGKLKTSFTND 438
           + L+    P TG+K GK +++F  D
Sbjct: 676 ILLKNLQNPSTGSKPGKPRSAFLTD 700


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 415 LKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLTTRVGW 525
           +K  + + T     NL   L GPV   A    +RVG+
Sbjct: 116 VKDVWQSATSGGGANLTNSLTGPVRPAACTPDSRVGY 152


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 383 KVPSRVTLRPAAILSWIVMSVANVLSVFH 297
           K+P   TLRP  +L  I++ V  ++   H
Sbjct: 46  KIPFYSTLRPINLLVQIILDVILLILNVH 74


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 383 KVPSRVTLRPAAILSWIVMSVANVLSVFH 297
           K+P   TLRP  +L  I++ V  ++   H
Sbjct: 46  KIPFYSTLRPINLLVQIILDVILLILNVH 74


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 383 KVPSRVTLRPAAILSWIVMSVANVLSVFH 297
           K+P   TLRP  +L  I++ V  ++   H
Sbjct: 366 KIPFYSTLRPINLLVQIILDVILLILNVH 394


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,643
Number of Sequences: 336
Number of extensions: 3822
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)