Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00142
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 42 9e-05
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 29 0.71
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 29 0.94
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 28 1.6
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 28 1.6
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.2
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 26 5.0
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 6.6
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 26 6.6
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c... 25 8.8
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +1
Query: 259 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 438
F K GLT ++ W T N L + + + ++ A GL + + TF+P T KT L +
Sbjct: 60 FNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQHP 119
Query: 439 TVAVNTNLD 465
+ + +++
Sbjct: 120 LIHTHASVN 128
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 80 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 256
MAPP YA + K ND+ + + G L ++T + +GV F ++ NQ++ G + G L +
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVF--NVSGNQDAKGVISGKLET 58
Query: 257 NLQ*K 271
+ K
Sbjct: 59 SFNDK 63
Score = 38.7 bits (86), Expect = 9e-04
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +3
Query: 510 YQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDC 686
++G+LAG +D QK S +GY + ++ N F S Y +VS ++
Sbjct: 142 HEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEA 201
Query: 687 GVRWKWTAGS-ADTL-FGVGAKYA 752
G W A S A+ + + +KYA
Sbjct: 202 GGNVTWDAASTANAITLELASKYA 225
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 29.1 bits (62), Expect = 0.71
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 672 DKLDCGVRWKWTAGSADTLFGVG 740
D + CGV+W W + D L+G+G
Sbjct: 349 DGVTCGVQWWWNNDTWDGLYGLG 371
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 28.7 bits (61), Expect = 0.94
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 669 SDKLDCGVRWKWTAGSADTLFGVG 740
SD + CG W W G+ D +G+G
Sbjct: 408 SDGVTCGYMWYWNNGTWDDHYGLG 431
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 534 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 674
H Q A F+K++ LGY+ AL++ DN + + K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.9 bits (59), Expect = 1.6
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +2
Query: 17 APICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLDLKTK 178
APIC EF+ Y F L T + YA G N S YH G D+ +
Sbjct: 288 APICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQ 342
Query: 179 SESGVEFTSGITSNQESGKVFG--SLSSNL 262
+E+ + T+G + ++SG G SL SNL
Sbjct: 343 TEAPISKTAGSINPEDSGSEIGSNSLESNL 372
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 364 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 468
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 222 RKAERFLAAFPQICSERLWLDFHREVEHRQYI 317
++AE F+A+ + S L+ F +VEH + +
Sbjct: 247 KQAEEFIASLEHVPSRVLYTGFSHKVEHNETV 278
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 684 CGVRWKWTAGSADTLFGVGAKYA 752
CG+ W W G+ D +GV +++
Sbjct: 349 CGIYWFWNNGTWDDNYGVQEQFS 371
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -2
Query: 387 GKSAFKGDFKASSNLVLDCDVSS*CIVCVPLLCESQAIVFHCKFEERLPKTFPLSWLE-- 214
GKS + G K N +LD + C+ + L + +C FEE+ +SWL
Sbjct: 380 GKSIW-GHMKG--NTLLDAKLVEDCLATLGYLQNNVFSFLNCLFEEKKYMKHFISWLNYA 436
Query: 213 VIPLVNSTPDSL 178
++ S P S+
Sbjct: 437 IVEFNTSEPSSI 448
>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 223 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG 116
L GG G+F++ L G++ ++ T+ AE +IG
Sbjct: 72 LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,148
Number of Sequences: 5004
Number of extensions: 61691
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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