Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00142
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 39 0.004
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 34 0.14
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 31 1.3
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346... 28 6.9
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 9.2
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 28 9.2
05_03_0373 - 13194723-13195847,13196219-13196809 28 9.2
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/66 (37%), Positives = 33/66 (50%)
Frame = +2
Query: 80 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSN 259
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L +
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 260 LQ*KTM 277
L+ K +
Sbjct: 58 LKNKKL 63
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 528 GVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKV 668
GV FDT + F+K N AL + D +LH N ++G S Y V
Sbjct: 142 GVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLV 189
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +3
Query: 549 TQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVRWKWTAGSADTL 728
T + +S+ F+ Y+ DF + N +GG+ Q V+ L G W +
Sbjct: 173 TNEPHYSQGMFSFDYKGKDFRSQFQLGNNAFYGGNYIQSVTKNLSLGTEAFWLGQQRKSG 232
Query: 729 FGVGAKY 749
G A+Y
Sbjct: 233 VGFVARY 239
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +3
Query: 528 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDKLDCGVRWKW 704
G FDT F+K N L + + D ++N G S Y KVS G
Sbjct: 296 GTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVSKTSAVGAELAH 355
Query: 705 TAGSADTLFGVGAKYA 752
+ S + G ++A
Sbjct: 356 SFSSNENTLTFGTQHA 371
>12_02_0156 -
14532000-14532098,14532669-14534330,14534445-14534660,
14534730-14534907,14535065-14535276
Length = 788
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/90 (27%), Positives = 35/90 (38%)
Frame = +1
Query: 238 FWQPFLKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKL 417
+W FL FA ++GLTF + T +K L G P +L
Sbjct: 144 YWAGFLYFAGVNFGLTFIAAM---LCVVFAPTAAGPGIPEIKAYLNGVDTPNM-FGAPQL 199
Query: 418 KTSFTNDTVAVNTNLDLDLAGPVVDVAAVL 507
AV++ LDL GP+V + A L
Sbjct: 200 IVKIIGSICAVSSGLDLGKEGPLVHIGACL 229
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 428 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 300
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 645 GGSIYQKVSDKLDCGVRWKWTAGS 716
G S ++ DCG WKW +GS
Sbjct: 749 GFSRSSQIGSNQDCGNNWKWPSGS 772
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 376 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 474
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,264,084
Number of Sequences: 37544
Number of extensions: 418646
Number of successful extensions: 1033
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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