Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00142
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical pr...    81   8e-16
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    29   2.7  
U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U58746-2|AAB00622.2|  283|Caenorhabditis elegans Hypothetical
           protein R05G6.7 protein.
          Length = 283

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/93 (39%), Positives = 58/93 (62%)
 Frame = +1

Query: 253 LKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFT 432
           +K+ +  YG+T TEKWNT+N L T I + ++   GLKVTL+  +AP  G ++GK+K  + 
Sbjct: 61  VKYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWA 120

Query: 433 NDTVAVNTNLDLDLAGPVVDVAAVLTTRVGWLV 531
             T  V  ++ +  A PV++ A V  +R GWL+
Sbjct: 121 LPTARVTADVGVTSA-PVINAAGVF-SRDGWLI 151



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/79 (32%), Positives = 40/79 (50%)
 Frame = +3

Query: 516 GWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVR 695
           GWL G    FD+   K +  + A G+ +  + LH+ V N  DFG S+Y KV+  ++ G +
Sbjct: 148 GWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTDFGASLYHKVASNVEVGTQ 207

Query: 696 WKWTAGSADTLFGVGAKYA 752
             W  G     + +  KYA
Sbjct: 208 LGWKVGGNGADYALATKYA 226



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +2

Query: 80  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSL 250
           MAPP +ADLGK A D+F+KGY+FG  K+D  T++     VEF S  + N  SGK+ G+L
Sbjct: 1   MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGKLGGNL 59


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
           protein C26G2.2 protein.
          Length = 952

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 274 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND-TVAV 450
           Y  TFT  W+T++T+ T    QD   + +  T E T A  +      + T  T + T +V
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSV 518

Query: 451 NTNLDLD 471
            +++  D
Sbjct: 519 VSSVPPD 525


>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 528 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGVRWKWT 707
           G   QF+T++    K     GY+    +L  N    +DFG +      +++DC V  KWT
Sbjct: 657 GNRNQFETEEE--CKQICLPGYEKSK-SLIPNNQLLEDFGNTEVDDGGERVDCEVS-KWT 712

Query: 708 A-GSADTLFGVGAK 746
           A GS     G G K
Sbjct: 713 AWGSCSVSCGRGKK 726


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,874,104
Number of Sequences: 27780
Number of extensions: 349943
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)