Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00141
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical p...    30   1.2  
AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    29   2.7  

>Z92807-5|CAB07265.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 283 LRFTYKNLGSTLFVQYNWHDCFVC 212
           L F   NL  T+F++Y W  C++C
Sbjct: 362 LAFLIVNLIGTVFIEYTWDACYLC 385


>Z81117-14|CAB03313.3|  272|Caenorhabditis elegans Hypothetical
           protein T06E6.3 protein.
          Length = 272

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +1

Query: 145 VFFLNKYILYKTHINLYVFIYIYTQNNRANYIVQITWNLNFY 270
           VFF+N+Y+ Y +H+  Y+ +  Y  +   ++I+ +   L+ +
Sbjct: 37  VFFVNEYLAYWSHLCGYILMICYKASTYFHFIISLNRFLSVF 78


>AL021482-5|CAA16342.1|  480|Caenorhabditis elegans Hypothetical
           protein K11D9.3 protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 283 LRFTYKNLGSTLFVQYNWHDCFVC 212
           L F   NL  T+F++Y W  C++C
Sbjct: 362 LAFLIVNLIGTVFIEYTWDACYLC 385


>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 103 GIMYKFLNKQTNESVFFLNKYILYKTHINLYVFIYIYTQNNRANYIVQI 249
           G+   FL   T  ++ F+  YI+  TH  L   I +Y Q +    +VQI
Sbjct: 261 GLAVPFLQGNTQGAINFI--YIIVSTHGALSTLIMVYLQKSYREAVVQI 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,102
Number of Sequences: 27780
Number of extensions: 298587
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)