Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00141
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    27   0.11 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 112 TLYPLTHLMCTHENALAHYNYIKTIFVQESN 20
           T+ P +H        L H+NY+K IF+  S+
Sbjct: 147 TVPPYSHQTDVWVELLKHFNYMKVIFIHSSD 177


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 175 KTHINLYVFIYIYTQNNRANYIVQITWNLNF 267
           KT  N   + Y Y  NN  N   ++ +N+N+
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 175 KTHINLYVFIYIYTQNNRANYIVQITWNLNF 267
           KT  N   + Y Y  NN  N   ++ +N+N+
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 175 KTHINLYVFIYIYTQNNRANYIVQITWNLNF 267
           KT  N   + Y Y  NN  N   ++ +N+N+
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 557 LEGTYESDYLLKYVLYKNSST*CNVYNI 474
           L+G  E +Y +    Y N  T CN+ N+
Sbjct: 37  LKGWKEVEYEVVRDAYDNCITVCNMENV 64


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 403 MF*IKLCKRFKSYMKFVFRNDILFFYFFMY 314
           M+ I+ C +FK  +   + ++I    FF++
Sbjct: 73  MYQIQQCGKFKEPVAVFYASEIAIGLFFLH 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,389
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)