Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00141
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73020.1 68414.m08444 expressed protein contains Pfam profile...    31   0.83 
At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger) fa...    28   5.8  

>At1g73020.1 68414.m08444 expressed protein contains Pfam profile
           PF04547: Protein of unknown function, DUF590; expression
           supported by MPSS
          Length = 558

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +1

Query: 106 IMYKFLNKQTNESVFFLNKYILYKTHINLYVFIYIY 213
           +  K +N++ NESV +    ++YKT+I ++  + ++
Sbjct: 273 VSVKLINREINESVEYRANSLIYKTYIGIFYHVLLH 308


>At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 132

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 167 MYLFKKNTDSFVCLFRNLYIIPTYALNVYSREC 69
           M  FK+N  + V  F ++  I  Y +N Y R C
Sbjct: 1   MSYFKRNEGTIVFAFASIGFIAFYIINYYIRRC 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,020,953
Number of Sequences: 28952
Number of extensions: 237592
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)