Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00140
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.86
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 27 2.6
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 3.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.5
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 26 4.6
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 6.1
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 8.0
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.0
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 352 VHKLNRVFGEDKSELNWETIPDDVL 278
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 108 QLYNSVVVADYDSAVEKSKHLYEEKKS 188
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 267 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 368
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 284 CPWSPGAKVDGVLHAVHLVVSYQFV 210
CPWS G +DG+L + + +S +FV
Sbjct: 52 CPWSIGNLLDGILSVLTIYIS-EFV 75
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 297 VSQLSSDLSSPKTRLSLCTSATV 365
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 470 LWENNKVYFKILNLNVTNTWYWESALTGTATIWPSESTAS 589
LW N+ VY+ + + + T T S TG+ T + +TAS
Sbjct: 737 LWANDAVYYPVSSSSTTTT----STSTGSVTTTSTTATAS 772
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 427 QGQDKPESQLEVNRSVGEQQGLLQDLEPERNQYLVLGVGTNW 552
+G KP + +++++ + G L+D + E N L G+ W
Sbjct: 108 EGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGW 149
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/74 (22%), Positives = 28/74 (37%)
Frame = +2
Query: 362 GLALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNLNVTNTWYWES 541
G+ TL + DDG + D + W+ + + I + + T S
Sbjct: 290 GIPQTLLLGEEADDGSDPDQETSDTAASDDGWEFGTIKQGQSNVSSITGTSTSTTTAATS 349
Query: 542 ALTGTATIWPSEST 583
+ T T T+ P ST
Sbjct: 350 STTVTGTVIPKSST 363
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 524 TWYWESALTGTATIWPSESTASIVS 598
T Y+ + G ATI PS TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 485 KVYFKILNLNVTNTWYWESALTGTA 559
++Y KILNL + T W SA+T A
Sbjct: 886 RIYLKILNLRLNGT-EWVSAITTKA 909
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 293 PGRCPWSPGAKVDGVLHAVHLVVSYQFVHDI 201
P + PW PG K++ V Y+ +H+I
Sbjct: 70 PSKIPWLPGGKINADEKLVADPSVYEMLHNI 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,996
Number of Sequences: 5004
Number of extensions: 47333
Number of successful extensions: 224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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