Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00140
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    35   0.055
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    31   0.90 
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437...    29   2.7  
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437...    29   2.7  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    29   3.6  
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841...    29   4.8  
12_01_0378 - 2946916-2947590                                           28   6.3  

>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 455 WKLIALWENNKVYFKILNLNVTNTWYWESALTGTATIWPSEST 583
           WK I  W       + LNL  + T Y +S L     IWP +ST
Sbjct: 403 WKDIGFWNEGNGILRQLNLGKSTTKYADSVLDLNPVIWPGKST 445


>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 287 RCPWSPGAKVDGVLHAVHLVVSYQFV 210
           RC WSP   + GV  + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455


>06_01_0605 +
           4373697-4373872,4374840-4374876,4375296-4375399,
           4375942-4376137,4376385-4376451,4376895-4376998,
           4377090-4377174,4377309-4377369,4377694-4377825,
           4377924-4377993,4379261-4379413,4379583-4379694,
           4379779-4379920,4380023-4380140,4380862-4380957,
           4381061-4381189
          Length = 593

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 186 SEVITNVVNKLIRNN--KMNCMEYAINFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 356
           SE I+++ N+L R+   K+ C     N  S A      I S+L S LS+  TRL  CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400


>04_04_0190 -
           23442824-23442846,23442891-23442949,23443613-23443737,
           23443767-23443901,23444195-23444301,23444488-23444566,
           23444856-23444942,23445045-23445281,23445783-23446128,
           23446486-23446694
          Length = 468

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 311 TQLGNNPGRCPWSPGAKVDGVLHAVHLVVSYQF 213
           T  G  P  CP S  AKV+      HLV++Y++
Sbjct: 411 TPFGGGPRLCPGSELAKVEAAFFLHHLVLNYRW 443


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -2

Query: 397 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAYSMQFILLFRI 218
           +L +IA   S    +  K + + GE K    W   PDD     +PK  A +  F LL  +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372

Query: 217 SLFTTFVMTSLFFS 176
            L++ F+  SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386


>01_03_0206 -
           13783169-13783651,13783761-13783903,13783962-13784128,
           13784641-13785149,13786031-13786312,13786397-13786792,
           13787232-13787504
          Length = 750

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 452 SWKLIALWENNKVYFKILNLNVTNTWYWESALTGTATIWPSESTASIV 595
           SW  IA    + V +   N ++ N W+W   + GTAT    +  + +V
Sbjct: 516 SWSYIA--NASSVGYAPGNFSMQNNWFWFEKVVGTATPEKDQQDSKVV 561


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 3   GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 143
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,425
Number of Sequences: 37544
Number of extensions: 313091
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)