Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00140
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.14
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 31 0.99
At5g56690.1 68418.m07076 F-box family protein contains F-box dom... 29 4.0
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t... 27 9.2
At1g80840.1 68414.m09484 WRKY family transcription factor simila... 27 9.2
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 9.2
At1g59077.1 68414.m06670 hypothetical protein 27 9.2
At1g58766.1 68414.m06659 hypothetical protein 27 9.2
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 9.2
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 6 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 185
+D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 186 SEVITNV 206
+ N+
Sbjct: 214 GSIAPNL 220
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 368
PR +G S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
Pfam:PF00646
Length = 402
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 520 QYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIY 657
+YL + N F +NS+++FR +WY + D D L I+
Sbjct: 344 EYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388
>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 231
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 464 IALWENNKVYFKILNLNVTNTWYWESAL 547
I W N ++++K + TNT WES +
Sbjct: 107 IRTWPNQRLHYKFIRCVETNTNAWESCV 134
>At1g80840.1 68414.m09484 WRKY family transcription factor similar
to WRKY transcription factor GB:BAA87058 GI:6472585 from
[Nicotiana tabacum]
Length = 302
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -2
Query: 364 TVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLMAY 248
T ALV +LNRV E+K T+ D L +LM Y
Sbjct: 30 TSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEY 68
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 99 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 206
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 52 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 147
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,218
Number of Sequences: 28952
Number of extensions: 250732
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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