Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00137
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-2|AAC46792.1|  369|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U40411-5|AAV28365.2|  221|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U23511-2|AAC46792.1|  369|Caenorhabditis elegans Hypothetical
           protein C32D5.4 protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +2

Query: 239 PRLVLWEENHQ----LTIDRYRTSCFEESMIFVQLVFRS 343
           PR   WE+ H     LTI+  + +CFE ++IF   +F S
Sbjct: 21  PRQQEWEKIHDVYFFLTINNTQGNCFETNIIFTATLFHS 59


>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical
           protein W08D2.5 protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 245 LVLWEENHQLTIDRYRTSCFEESMIFVQLVFRSR*NVIALHWKFIW 382
           + L   +H LT+  YRT  F   + +   V       + LHWK  W
Sbjct: 1   MTLESGDHTLTLFAYRTGPFRTILFYALTVLTLGIFRLILHWKQKW 46


>U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical
           protein C06G1.5 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 97  TPAPKLLITRTIPPEISSP*KGLYY 23
           TP P  +I+R +PP+  +P + +YY
Sbjct: 118 TPKPTQVISRPLPPKPQAPKEPIYY 142


>U40411-5|AAV28365.2|  221|Caenorhabditis elegans Hypothetical
           protein B0403.6 protein.
          Length = 221

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 130 EVLKSCFSATLYRVCLFVCLGYDLKRIHTIAMKLDTAATGALGRE 264
           E ++ CF+ T YR+C+ +     +  I+ +   +   ATG+ GR+
Sbjct: 171 ENVRRCFTFTAYRICMVIVNICHILAIYIVIKNI--IATGSGGRQ 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,939,580
Number of Sequences: 27780
Number of extensions: 228946
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)