Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00136
         (534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.97 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   6.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 347  TVTGKLVARKSSIPRNNSCDIYLSSVDDSLPRAPVAAVSSFIAIV 213
            TVTG  +A    IP+ ++  I L++++  +P   VAAV   I  +
Sbjct: 1583 TVTGGTIAPAREIPKEDTFQIILANLNLVVP--VVAAVLVIIVAI 1625


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 336 KTSCTKIIDSSKQ 298
           KTSC K  D  KQ
Sbjct: 71  KTSCAKCTDKQKQ 83


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 112 AFRH*TPAPKLLITRTIP 59
           AF   TP  + ++TRTIP
Sbjct: 10  AFLILTPTDQRVVTRTIP 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,645
Number of Sequences: 336
Number of extensions: 2387
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)