Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00136
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   5.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   5.4  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   5.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   5.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.4  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 155  QLCIVFVCLFVLDMILNAFIR 217
            QL +   CLF LD+I +AFI+
Sbjct: 1007 QLVVRIACLFDLDLIRDAFIK 1027


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -2

Query: 134 TSDNLVPSFSALNAGSKTLNYTNHPTRNIVSIKGIVLRDLI 12
           T+ NL  + S L   ++  +  N P  N +  + ++++DL+
Sbjct: 401 TNTNLEETISTLEYAARAKSIRNKPQNNQLVFRKVLIKDLV 441


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -3

Query: 337 EN*LHENHRFLETTRAISIYRQLMILFPEHQSRLYQASLQSYECV*DHIQDKQTNKHDTE 158
           E+ +H+  +FL T +    Y + + L    +   Y + + S + + D  + K    HDT+
Sbjct: 515 EDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWSTDELADISETKNLVGHDTK 574

Query: 157 LQRS 146
             RS
Sbjct: 575 TNRS 578


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 182 TNKQTRYRVAEKQDFKTSDNL-VPSFSALNAGSKTLNYTNHPTRNIV 45
           T K   Y  +  +     D+L VPS +AL   S +LNY+   + N +
Sbjct: 118 TKKHAVYATSAPKSMSLQDSLSVPSATALADVSSSLNYSRKLSSNSI 164


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 135 DFRQLSSELFGIKRRLQNS*LHEPS 61
           D ++LSSE  G+K+RL NS  +E S
Sbjct: 412 DDKRLSSEPNGLKKRLTNSSNYEAS 436


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 286  ISHELFRGIDDFRATSFPVTVKRDRTSLEIH 378
            +S+ L   ID+   T FP+    +R+S++I+
Sbjct: 1391 VSNNLQVSIDEATQTDFPLVFSPERSSIDIN 1421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,158
Number of Sequences: 5004
Number of extensions: 41035
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)