Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00136
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0030 - 15687877-15688083,15688177-15688471,15688551-156887...    31   0.58 
12_02_0584 + 20819822-20820970,20821394-20821618,20821776-208219...    28   4.1  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    28   5.4  
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619     27   7.2  
01_05_0556 + 23236156-23236364,23236623-23236689,23236903-232371...    27   7.2  
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099     27   9.5  
06_01_0855 + 6493239-6494420                                           27   9.5  
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    27   9.5  

>06_03_0030 -
           15687877-15688083,15688177-15688471,15688551-15688721,
           15688968-15689026
          Length = 243

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 100 NAEKLGTKLSEVLKSCFSATLYRVCLFVC 186
           NAEKLG   SE+L   F A     C F+C
Sbjct: 173 NAEKLGLDTSEILPHVFKALTDEFCGFIC 201


>12_02_0584 +
           20819822-20820970,20821394-20821618,20821776-20821907,
           20822511-20822534
          Length = 509

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 85  LEPAFNAEKLGTKLSEVLKSCFSA-TLYRVCLFVCLGYDLKRIHTIAMKLDTAATGALGR 261
           L+  F+ EKL   + +V+K       +  + + V +  D    H +AM  DT  T A+G 
Sbjct: 377 LKMEFDEEKLHAGIEDVIKDIPKLPNITDLRITVAMSTDTMDTHAVAMSTDTMDTHAIGA 436

Query: 262 ESS 270
            ++
Sbjct: 437 STT 439


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 194 YPRQTNKQTRYRVAEKQDFKTSDNLVPSFSALNAGSKTLNYTNHPT 57
           Y R+TN  + Y  A+ +     D ++     +++G + LN  NHP+
Sbjct: 666 YTRKTNNCSVYPGADVKYVAVDDQILNHTDYVSSGCEVLNPENHPS 711


>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
          Length = 398

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -1

Query: 216 RMNAFKIISKTNKQTNTIQSCREAGL*DFRQLSSELFGIKRRLQNS*LHEPSHQKYRLHK 37
           R+N F  + +T  +        ++ L D     + LFG  RR+ +   +  ++++YR   
Sbjct: 251 RLNFFTSLDRTLNERLDFYESSDSSLDDSIDFLASLFGHGRRIASGDSYTRAYRRYRERP 310

Query: 36  RDCITRS 16
           R  +T S
Sbjct: 311 RRNVTAS 317


>01_05_0556 +
           23236156-23236364,23236623-23236689,23236903-23237108,
           23237284-23237510,23237865-23237926
          Length = 256

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 97  FNAEKLGTKLSEVLKSC--FSATLYRVCLFVCLGY 195
           FN+      + E  K C  F+ATLY + LF+C+ Y
Sbjct: 159 FNSAAFMLYVIERAKKCLDFAATLYIIHLFICIVY 193


>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
          Length = 575

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 203 LRSYPRQTNKQTRYRVAEKQDFKTSDNLVPSFSALNAGSKT 81
           L SYPRQ +++  YRV E   ++   +L+     L   ++T
Sbjct: 148 LLSYPRQQSREEDYRVLELYKWRCVGSLIGRHHLLQEPTRT 188


>06_01_0855 + 6493239-6494420
          Length = 393

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 307 GIDDFRATSFPVTVKRDRTSLEIHLGPATARV 402
           G+ DF ATSFP+   R  T+  I+L  A ARV
Sbjct: 198 GMSDF-ATSFPLYTSRLFTANPIYLRDAVARV 228


>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 92   GSKTLNYTNHPTRNIVSIKGIVLRDLI 12
            GS +LN  + P+R+I  +KG+ L D I
Sbjct: 1174 GSTSLNSKSDPSRSISELKGVSLLDSI 1200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,884,153
Number of Sequences: 37544
Number of extensions: 263337
Number of successful extensions: 528
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)