Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00136
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 30   1.0  
SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4)                      28   5.5  
SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)                      28   5.5  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               27   7.3  
SB_42827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)                 27   9.6  

>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 169 VCLFVCLGYDLKRIHTIAMKLDTAATGALGRE 264
           VCLFVC G +LK +   +M L TA TG   R+
Sbjct: 8   VCLFVCGGLELKSVVPTSMDL-TAGTGHSDRD 38


>SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4)
          Length = 355

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 TKLSEVLKSCFSATLYRVCLFVCLGYDL 201
           T +S+V  S  S  L   CLF+CL Y L
Sbjct: 320 TTISQVAHSNLSKRLLAFCLFMCLAYVL 347


>SB_48195| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 1743

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 127  SEVLKSCFSATLYRVCLFVCLGYDLKRIHTI 219
            +E +K   + TL+ VC +   GYD KR  +I
Sbjct: 1547 NEKIKQAQARTLFAVCRYFGFGYDHKRYESI 1577


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 TKLSEVLKSCFSATLYRVCLFVCLGYDL 201
           T +S+V  S  S  L   CLF+CL Y L
Sbjct: 354 TTISQVAHSNLSKRLLAFCLFMCLAYVL 381


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 139 KSCFSATLYRVCLFVCLGYDLKRIHTIAMKLD 234
           + C    LY+  +++C GYD + I+     LD
Sbjct: 280 RRCHGCVLYKDAVYICGGYDGQTIYNDVWSLD 311


>SB_42827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 402 DAGRRGPQMNFQ*SAITFHRDRKTSCTKIID 310
           DA  + P  N   S IT+ RD  T   ++ID
Sbjct: 39  DAQAKWPSSNITISGITYRRDANTKLNEVID 69


>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 292 AISIYRQLMILFPEHQSRLYQASLQSYECV*DHIQDKQT---NKHDTEL 155
           AI+ Y+Q M ++P H    +   +   +C   H    +T   N+HD EL
Sbjct: 96  AINRYKQFMNIYPAHLKHPFHTGMMCEQC--GHKAAHKTNCENRHDMEL 142


>SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)
          Length = 1002

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +1

Query: 124 LSEVLKSCFSATLYRVCLF----VCLGYDLKRIHTIAM 225
           L+ V+K C  A + +VCL     VCL  D+K+ HT A+
Sbjct: 397 LANVIKVCL-AIVIKVCLANVIKVCLANDIKKHHTDAV 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,320,246
Number of Sequences: 59808
Number of extensions: 315463
Number of successful extensions: 886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)