Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00136
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 325 HENHRFLETTRAISIYRQLMILFPEHQSRLYQASLQSYECV*D 197
           +EN  F +TT  +S+ +  + L+PE  S      +QS + V D
Sbjct: 353 NENRDF-QTTPTVSVEQPHLFLYPEVSSTYTGFGIQSTDFVGD 394


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 161 CIVFVCLFVLDMILNAFIRLQ*SLIQPRLVLWE 259
           C++F  LFVL   L    +LQ +      +++E
Sbjct: 16  CVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYE 48


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 161 CIVFVCLFVLDMILNAFIRLQ*SLIQPRLVLWE 259
           C++F  LFVL   L    +LQ +      +++E
Sbjct: 16  CVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYE 48


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 499 CVDYTGQFRPFH 534
           CV+Y G+ RP H
Sbjct: 383 CVNYVGRKRPMH 394


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 499 CVDYTGQFRPFH 534
           CV+Y G+ RP H
Sbjct: 352 CVNYVGRKRPMH 363


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 499 CVDYTGQFRPFH 534
           CV+Y G+ RP H
Sbjct: 403 CVNYVGRKRPMH 414


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 499 CVDYTGQFRPFH 534
           CV+Y G+ RP H
Sbjct: 352 CVNYVGRKRPMH 363


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 197 ILNAFIRLQ*SLIQPRLVLWE--ENHQLTIDRYRTSCFEESMIFVQL 331
           IL+  I  +  + +P++ ++   +N  +T+ R+  + F+ES +FV +
Sbjct: 136 ILDTGILGEKQICRPKIHVFSLHDNKLITMYRFPQNQFKESSLFVTI 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,137
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)