Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00136
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17410.2 68418.m02043 tubulin family protein similar to spind...    28   3.4  
At5g17410.1 68418.m02042 tubulin family protein similar to spind...    28   3.4  
At3g24600.1 68416.m03090 hypothetical protein                          28   3.4  
At3g23090.1 68416.m02911 expressed protein                             27   7.9  

>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 679

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 319 NHRFLETTRAISIYRQLMILFPEHQSRLYQASLQ 218
           NH F    RA+ +  Q M+   EHQ RL + S+Q
Sbjct: 141 NHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQ 174


>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 678

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 319 NHRFLETTRAISIYRQLMILFPEHQSRLYQASLQ 218
           NH F    RA+ +  Q M+   EHQ RL + S+Q
Sbjct: 140 NHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQ 173


>At3g24600.1 68416.m03090 hypothetical protein
          Length = 506

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 383 PK*ISSEVRSRFTVTGKLVARKSSIPRNNSCDIYLSSVDDSLP 255
           P  +  E+RSR  + GKLV  KS    + SC  ++SS   S P
Sbjct: 453 PVKLEFEIRSRGNLLGKLV--KSKHENHVSCSFFISSSKTSKP 493


>At3g23090.1 68416.m02911 expressed protein 
          Length = 338

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 190 QDKQTNKHDTEL---QRSRTLRLQTT*FRAFRH*TPAPKLLITRTIPPEISSP 41
           Q +  NK  TE    Q  ++LR +      F H  P PK+ + + +P    SP
Sbjct: 225 QSEARNKEATEAALRQLRKSLRFKANPMPKFYHEGPPPKVELKKPLPTRAKSP 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,307,031
Number of Sequences: 28952
Number of extensions: 215186
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)