Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00135
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58758-10|AAB93435.1| 349|Caenorhabditis elegans Hypothetical p... 46 3e-05
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 31 0.60
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 0.60
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 0.60
Z46937-4|CAA87059.2| 221|Caenorhabditis elegans Hypothetical pr... 31 0.79
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 31 0.79
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 31 0.79
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 30 1.4
AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 29 4.2
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 29 4.2
U00032-11|AAA50630.1| 189|Caenorhabditis elegans Hypothetical p... 29 4.2
AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical ... 29 4.2
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 28 5.6
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 28 5.6
AF099920-3|AAK29845.1| 216|Caenorhabditis elegans Hypothetical ... 28 5.6
Z82265-6|CAB05170.2| 537|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 27 9.8
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 27 9.8
U00031-3|AAK18866.2| 348|Caenorhabditis elegans Hypothetical pr... 27 9.8
U00031-2|AAT92090.1| 377|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 27 9.8
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 27 9.8
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 27 9.8
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 27 9.8
>U58758-10|AAB93435.1| 349|Caenorhabditis elegans Hypothetical
protein ZK1127.4 protein.
Length = 349
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 13 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQA-DFEGRNPEDSDFHGIKQLL 189
+K +E + + +++D E D D D + E+ + DFE P + D GI +L
Sbjct: 30 RKEEEPEPVEDVEEDEDVSDEDDEDIDDEEEDEDEQNIMDFDFEAYPPSEDDRDGIVNML 89
Query: 190 RQLFLKSNVDLGGLAQIIISQ 252
Q FL++++DL +++ II++
Sbjct: 90 TQTFLRTDIDLKAMSEGIIAK 110
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 1 KMPNKKNKEIDTNS-ERTKEQDSGSEKDSDFDSDGNYVGEKE-LQADFEGRNPEDSDFHG 174
K+ +K K+ +T S E+ KEQ+ +++ S + D EK+ L+++ + + E++
Sbjct: 9920 KLEEQKKKDAETASIEKQKEQEKLAQEQSKLEVDAKKSAEKQKLESETKSKKTEEAPKES 9979
Query: 175 IKQLLRQLFLKSNVD 219
+ + ++ LK +
Sbjct: 9980 VDEKPKKKVLKKKTE 9994
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 1 KMPNKKNKEIDTNS-ERTKEQDSGSEKDSDFDSDGNYVGEKE-LQADFEGRNPEDSDFHG 174
K+ +K K+ +T S E+ KEQ+ +++ S + D EK+ L+++ + + E++
Sbjct: 9940 KLEEQKKKDAETASIEKQKEQEKLAQEQSKLEVDAKKSAEKQKLESETKSKKTEEAPKES 9999
Query: 175 IKQLLRQLFLKSNVD 219
+ + ++ LK +
Sbjct: 10000 VDEKPKKKVLKKKTE 10014
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 1 KMPNKKNKEIDTNS-ERTKEQDSGSEKDSDFDSDGNYVGEKE-LQADFEGRNPEDSDFHG 174
K+ +K K+ +T S E+ KEQ+ +++ S + D EK+ L+++ + + E++
Sbjct: 9940 KLEEQKKKDAETASIEKQKEQEKLAQEQSKLEVDAKKSAEKQKLESETKSKKTEEAPKES 9999
Query: 175 IKQLLRQLFLKSNVD 219
+ + ++ LK +
Sbjct: 10000 VDEKPKKKVLKKKTE 10014
>Z46937-4|CAA87059.2| 221|Caenorhabditis elegans Hypothetical
protein F43C1.5 protein.
Length = 221
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQAD 135
K+P K +K + + K+ + D D DG Y+GE E++++
Sbjct: 152 KIPGKNSKNSKISVNKAKKLEPRRRSDEDRVPDGPYIGEGEVKSE 196
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFE 141
K+P +D E KE+D ++D D D D V +KE +A E
Sbjct: 1072 KIPKMLKPVVDDRREDRKERDRDRDRDRDRDEDREKVRDKEDKAQRE 1118
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFE 141
K+P +D E KE+D ++D D D D V +KE +A E
Sbjct: 1072 KIPKMLKPVVDDRREDRKERDRDRDRDRDRDEDREKVRDKEDKAQRE 1118
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQAD 135
K + +KE + + E+ KE+D G EK+ D D + +K+ + D
Sbjct: 1228 KDKKEPHKEKEKDKEKEKEEDKGKEKEKHKDKDKDKEHKKKSRED 1272
>AL031632-2|CAA21005.2| 789|Caenorhabditis elegans Hypothetical
protein Y32B12B.2 protein.
Length = 789
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 16 KNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 165
K E D + + K++ G D +SDG E E + + EG + EDSD
Sbjct: 702 KLDESDEDEDELKDRKHGLFDDEASESDGEDEFEDEDEEEPEGEDLEDSD 751
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 16 KNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHGIKQ 183
+ K + N E+ +E++ EK+ + D + EKE + D E + IK+
Sbjct: 355 EEKVVKKNKEKEREKEKDKEKEKEKDKEKEKEKEKEKEKDKEKEREKRKSKEKIKE 410
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 13 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPED 159
KKNKE + E+ KE++ EKD + + + EK+ + + E R ++
Sbjct: 360 KKNKEKEREKEKDKEKE--KEKDKEKEKEKEKEKEKDKEKEREKRKSKE 406
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSD-GNYVGEKELQADFEGRNPEDSD 165
K KK+K+ + + E K++D +KD D D D N +K+ + D + E+ +
Sbjct: 258 KDKKKKDKKKNDDDEEDKKKDKKKKKDDDDDEDEDNKKKDKKKKKDDKDDEDEEKE 313
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDS---GSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 165
K KK K+ + + KE+D +KD D D D +K+ + D + ED D
Sbjct: 295 KKDKKKKKDDKDDEDEEKEKDKKKKDKKKDDDDDDDEKEKKDKKKKDDKDDDEDEDKD 352
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 165
K +KK + D E K++D +KD D + +K+ + + + +D D
Sbjct: 200 KKKDKKKDDDDDEDENDKKKDKKKKKDDKDDDENEDDKKKDKKKKKDDKEKDDDD 254
>U00032-11|AAA50630.1| 189|Caenorhabditis elegans Hypothetical
protein F37A4.2 protein.
Length = 189
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 13 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 165
KKN E D +S + DSGS D++ + N E + + + E + E ++
Sbjct: 136 KKNNESDESSSDDSDSDSGSGSDNESEGKQNTEVEDKDKVEKEETDDEKTE 186
>AC006834-8|AAF40006.1| 865|Caenorhabditis elegans Hypothetical
protein ZK973.2 protein.
Length = 865
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 4 MPNKKNKEIDTNSERTKEQDSGSEKDSDFD 93
+ N K +E+ +R ++QDS SE+D + +
Sbjct: 347 LDNSKRREVQKQRKRPQKQDSSSEEDDEVE 376
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 10 NKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 165
+KK K S+R K+ + S++D D D D KE+Q + E+ D
Sbjct: 25 SKKMKMAKEKSKRKKKMVASSDEDED-DDDDEEENRKEMQGFIADDDDEEED 75
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 10 NKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 165
+KK K S+R K+ + S++D D D D KE+Q + E+ D
Sbjct: 25 SKKMKMAKEKSKRKKKMVASSDEDED-DDDDEEENRKEMQGFIADDDDEEED 75
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 10 NKKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 165
+KK K S+R K+ + S++D D D D KE+Q + E+ D
Sbjct: 25 SKKMKMAKEKSKRKKKMVASSDEDED-DDDDEEENRKEMQGFIADDDDEEED 75
>AF099920-3|AAK29845.1| 216|Caenorhabditis elegans Hypothetical
protein H06H21.3 protein.
Length = 216
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 10 NKKNKEIDTNSERTKEQDSGSEKDSDFDS-DGNYVGEKELQA 132
++K+ E + S++ +E D SE++SD DS D + + E++L A
Sbjct: 152 SEKSDE-EAGSDKEEESDDDSEEESDEDSDDSDNIREEDLAA 192
>Z82265-6|CAB05170.2| 537|Caenorhabditis elegans Hypothetical
protein F02H6.1 protein.
Length = 537
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 7 PNKKNKEIDTNSERTKEQDSGSE 75
PN N+E++ S+RT+++ +GSE
Sbjct: 507 PNAGNEEVEDPSQRTRKRGNGSE 529
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 88 FDSDGNYVGEKELQADFEGRNPEDSDF-HGIKQLLRQLFLKSNV 216
F+ D +++GE+E+Q D + PED+D H +K LL KS V
Sbjct: 380 FNKDVDFIGEEEIQ-DLD---PEDADHRHQVKVLLLSHAGKSEV 419
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 88 FDSDGNYVGEKELQADFEGRNPEDSDF-HGIKQLLRQLFLKSNV 216
F+ D +++GE+E+Q D + PED+D H +K LL KS V
Sbjct: 380 FNKDVDFIGEEEIQ-DLD---PEDADHRHQVKVLLLSHAGKSEV 419
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 7 PNKKNKEIDTNSERTKEQDSGSEKDSDFDS-DGNYVGEKELQADFEGRNPE 156
P +K+KE+ +E +E++ G E D ++ +G Y E A+ E +PE
Sbjct: 117 PVEKHKEVHFKNE-PEEEEIGKEDDGGGEAEEGEYEEENGSDAEEEEESPE 166
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 7 PNKKNKEIDTNSERTKEQDSGSEKDSDFDS-DGNYVGEKELQADFEGRNPE 156
P +K+KE+ +E +E++ G E D ++ +G Y E A+ E +PE
Sbjct: 117 PVEKHKEVHFKNE-PEEEEIGKEDDGGGEAEEGEYEEENGSDAEEEEESPE 166
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 13 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKEL 126
KK K NS+ ++E D ++ DFDSD + V +++
Sbjct: 1331 KKEKSDGFNSDMSEESDVEFDEGIDFDSDDDGVEREDV 1368
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical protein
K12D12.1 protein.
Length = 1520
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 13 KKNKEIDTNSERTKEQDSGSEKDSDFDSDGNYVGEKEL 126
KK K NS+ ++E D ++ DFDSD + V +++
Sbjct: 1331 KKEKSDGFNSDMSEESDVEFDEGIDFDSDDDGVEREDV 1368
>U00031-3|AAK18866.2| 348|Caenorhabditis elegans Hypothetical
protein B0361.5a protein.
Length = 348
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 544 WYANRCRNV*YSSLITRPVC*ESSARIYLINSLVLGSAFS*DSFVSNSLICAT 386
W AN+CR+V L RP ++ +N V+ + F S S + AT
Sbjct: 214 WVANQCRHVPGLLLSVRPTLLSHVPHLFCLNERVVLNGSWRHGFFSMSAVAAT 266
>U00031-2|AAT92090.1| 377|Caenorhabditis elegans Hypothetical
protein B0361.5b protein.
Length = 377
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 544 WYANRCRNV*YSSLITRPVC*ESSARIYLINSLVLGSAFS*DSFVSNSLICAT 386
W AN+CR+V L RP ++ +N V+ + F S S + AT
Sbjct: 243 WVANQCRHVPGLLLSVRPTLLSHVPHLFCLNERVVLNGSWRHGFFSMSAVAAT 295
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 88 FDSDGNYVGEKELQADFEGRNPEDSDF-HGIKQLLRQLFLKSNV 216
F+ D +++GE+E+Q D + PED+D H +K LL KS V
Sbjct: 380 FNKDVDFIGEEEIQ-DLD---PEDADHRHQVKVLLLSHAGKSEV 419
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 88 FDSDGNYVGEKELQADFEGRNPEDSDF-HGIKQLLRQLFLKSNV 216
F+ D +++GE+E+Q D + PED+D H +K LL KS V
Sbjct: 380 FNKDVDFIGEEEIQ-DLD---PEDADHRHQVKVLLLSHAGKSEV 419
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 7 PNKKNKEIDTNSERTKEQDSGSEKDSDFDS-DGNYVGEKELQADFEGRNPE 156
P +K+KE+ +E +E++ G E D ++ +G Y E A+ E +PE
Sbjct: 117 PVEKHKEVHFKNE-PEEEEIGKEDDGGGEAEEGEYEEENGSDAEEEEESPE 166
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 1 KMPNKKNKEIDTNSERTKEQDSGSEKDS 84
K N K+ + SE E DSGSEKD+
Sbjct: 483 KQKNDKDSSEGSGSEPDDEYDSGSEKDA 510
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,247
Number of Sequences: 27780
Number of extensions: 262149
Number of successful extensions: 1292
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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