Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00134
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                123   2e-28
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           90   2e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              86   3e-17
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     42   5e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.41 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.41 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              31   0.95 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   1.2  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.2  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)                      28   6.7  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  123 bits (296), Expect = 2e-28
 Identities = 56/59 (94%), Positives = 57/59 (96%)
 Frame = +2

Query: 251 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 427
           G GSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 251
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 40/100 (40%), Positives = 63/100 (63%)
 Frame = +2

Query: 209 QTYHREVREGGPGNG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 388
           + Y RE +E        ++  +W LD  + ER++G T+++    F+T   + T++DAPGH
Sbjct: 177 EKYEREAKEKNRE----TWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232

Query: 389 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 508
           + F+ NMI+G +QAD  VL+++A  GEFE G  + GQTRE
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTRE 272



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/49 (48%), Positives = 37/49 (75%)
 Frame = +1

Query: 511 ALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 657
           A+LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 274 AMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 33.1 bits (72), Expect = 0.23
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 189 YKCGGIDKRTIEKFEKEAQEMGKD 260
           Y  G +DKRT+EK+E+EA+E  ++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRE 189


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 37/63 (58%), Positives = 48/63 (76%)
 Frame = +2

Query: 320 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 499
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 500 TRE 508
           TRE
Sbjct: 61  TRE 63



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 511 ALLAFTLGVKQLIVGVNKMD 570
           A+L  +LGV QLIV +NK+D
Sbjct: 65  AILVRSLGVTQLIVAINKLD 84


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 284 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 463
           D ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 464 G 466
           G
Sbjct: 115 G 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 362 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 311 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 457
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 105 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 200
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 356 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 466
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
 Frame = +2

Query: 284 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 424
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G  
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122

Query: 425 QADCAVLIVAAGTGEFEAGISKNGQTR 505
               A +I   GT   E G  ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 287 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 454
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 IIDAPGHRDFIKNMITGTSQADCAVLIV 451
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 120 THINIVVIGHVDSGKSTTTGHLIY 191
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 278  VLDKLKAERERGITI 322
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 129  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 227
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
          Length = 228

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 123 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMGKDPSNML 275
           H+   VIGH+    ST  GHLI     C  + + + + F+++   + K  +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 571  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 711
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,057,978
Number of Sequences: 59808
Number of extensions: 471213
Number of successful extensions: 1333
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)