Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00133
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    31   0.13 
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    28   1.6  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    27   3.8  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   6.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   8.8  

>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +1

Query: 298  LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYISRQFVRKY- 474
            +G T + E D+F  N  V +F P+  + +          K +E+ DEH     Q V +  
Sbjct: 1048 IGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQEQLVTELL 1107

Query: 475  -SLPEGAETANVAP 513
              LPE     N  P
Sbjct: 1108 GYLPEPPSKPNANP 1121


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 595 VIGTTLSPLSSITFLGAVTVKIPSAD 518
           ++GT L PL+ +T L  + VK+P  D
Sbjct: 561 ILGTILIPLNLVTGLWGMNVKVPGQD 586


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 140 EECPCKKQRDNKLVDQDFGMPLTPDD 217
           EE   KK +D ++VD  FG+ L+ DD
Sbjct: 338 EEEERKKGKDGQIVDAGFGLVLSKDD 363


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 142 RMSL*KAARQQTCGSGLRDAANSGRLLNKHDDAVDSSRYFRPWRHT 279
           +++L KAAR++   SG + + +     +K++D + +   F  ++HT
Sbjct: 21  QLTLSKAARKKDNSSGKKRSVSEEESQDKYEDEMKTEGEFPSYKHT 66


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +1

Query: 277 TASLARDLGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYISR 456
           TAS+     S  K+ +++       QH +  E    T E     +  +EE  ++ G+I+ 
Sbjct: 137 TASVKETENSDPKSAENEVLEGETTQHSNNKEAHPNTEENKE--QEDNEEDDEDDGWITP 194

Query: 457 QFVRKYSLPEGAETANVAPSY 519
             +RK    +G   + V P +
Sbjct: 195 SNIRKKKAEDGVGESLVQPKH 215


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 298 LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEA 414
           L S+I+ EK +    LD++ +SP+E+   +   Y + EA
Sbjct: 475 LKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWYPIPEA 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,227
Number of Sequences: 5004
Number of extensions: 58909
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)