Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00133
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 33 0.32
01_01_0229 - 1943473-1943922 31 1.3
01_01_0231 + 1951047-1951499 30 2.3
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 30 2.3
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 29 5.2
12_01_0107 - 843820-846335,846400-846511 28 6.9
07_03_1176 + 24567720-24570932 28 6.9
05_02_0022 + 5682045-5682301,5682477-5682720 28 6.9
01_01_0794 - 6184622-6185317 28 6.9
04_01_0106 + 1102880-1105691,1105781-1105806 28 9.2
02_05_0972 + 33198035-33198277,33198366-33198641 28 9.2
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614... 28 9.2
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 28 9.2
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 32.7 bits (71), Expect = 0.32
Identities = 25/78 (32%), Positives = 34/78 (43%)
Frame = +1
Query: 160 AARQQTCGSGLRDAANSGRLLNKHDDAVDSSRYFRPWRHTASLARDLGSTIKTEKDKFQI 339
AA Q SG + ++ L N + ++ RPW H + L + I TEK Q
Sbjct: 401 AAEAQIQNSGPTEKSS---LTNDTKPSESTTSIKRPWEHKVVNEKPLQNNIDTEK-PLQN 456
Query: 340 NLDVQHFSPDEISVKTAE 393
N D + S I VK AE
Sbjct: 457 NTDTEKSSSSAIDVKLAE 474
>01_01_0229 - 1943473-1943922
Length = 149
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 346 DVQHFSPDEISVKTAEGYVVV-----EAKHEEKQDEHGYISR---QFVRKYSLPEGAETA 501
D+ +E+ V+ EG V+V + E+K D+ + R QF+R++ LPE A+
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 502 NVAPS 516
V S
Sbjct: 118 QVKAS 122
>01_01_0231 + 1951047-1951499
Length = 150
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 346 DVQHFSPDEISVKTAEGYVVV-----EAKHEEKQDEHGYISR---QFVRKYSLPEGAETA 501
D+ +E+ V+ EG V+V + E+K D+ + R QF+R++ LPE A+
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 502 NV 507
V
Sbjct: 119 QV 120
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +1
Query: 346 DVQHFSPDEISVKTAEGYVVV-----EAKHEEKQDEHGYISR---QFVRKYSLPEGAETA 501
D+ +E+ V+ EG V+V + E+K D+ + R QF+R++ LPE A+
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 502 NV 507
V
Sbjct: 119 QV 120
>10_08_0259 + 16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 516 LSADGILTVTAPRKVIDDKGERVVPI-TKTGPVRKESAESKNSKEADPGFCEDGSQKCNN 692
LS + +L V APRK D + + T++ ++ A S++ + P + +KCNN
Sbjct: 1349 LSYNKLLEV-APRKATHDAERKPSTVPTESSLIQPPKATSRSRQPQQPKITSNNQKKCNN 1407
Query: 693 V 695
+
Sbjct: 1408 L 1408
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +1
Query: 340 NLDVQHF----SPDEISVKTAEGYVVVEAKHEEKQDEHGYISRQFVRKYSLPEGAET-AN 504
NLD Q PD ISV T E + E H E ++ + + VR SL + E +
Sbjct: 223 NLDSQEIVAICQPDNISVGTKERVQLYEGFHVESHED---LIEELVRSLSLSDDEEEFVD 279
Query: 505 VAPSYPLTEF*RSQ 546
+A + L + RSQ
Sbjct: 280 IAENSELNDALRSQ 293
>07_03_1176 + 24567720-24570932
Length = 1070
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 616 RNLQSLKIQKKPIQGSVKTEVRNAITFSGLVIS 714
RNL++L + + + GSV E+ + S LV+S
Sbjct: 246 RNLRALDVSRNSLSGSVPAELGGCVELSVLVLS 278
>05_02_0022 + 5682045-5682301,5682477-5682720
Length = 166
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 310 LWSLGRGPKTPCAAKVGSSVNYPR 239
LWSL P + + KV S + YPR
Sbjct: 140 LWSLAESPLSAASGKVHSDLTYPR 163
>01_01_0794 - 6184622-6185317
Length = 231
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 248 LSTASSCLLRSRPELAASRSPDPQVCCLAAFYRDILHLPL 129
L SC SR S S +P+ CC Y ++L + L
Sbjct: 27 LPVDQSCFALSRLSYRRSSSSNPRACCSTTSYLEVLAISL 66
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 SRYFRPWRHTASLARDLGSTIKTEKD-KFQINLDVQHFSPDEISVKTAEGYVVVEAKHEE 426
S+ W+ A+ ++ + ++ ++ K Q N+D+ SP I + ++ + + KH
Sbjct: 113 SKSMMHWQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNN 172
Query: 427 K 429
K
Sbjct: 173 K 173
>02_05_0972 + 33198035-33198277,33198366-33198641
Length = 172
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = +1
Query: 379 VKTAEGYVVVEAKHEEKQDEHGYIS-------RQFVRKYSLPEGAETANVA 510
+K++ G + K EE++ E YI R F RK+ LPE A+T ++
Sbjct: 92 MKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGIS 142
>01_06_1466 +
37559600-37559795,37560597-37560730,37561252-37561437,
37562538-37562753,37563008-37563119,37563493-37563663,
37564621-37564684,37565555-37565685,37566263-37566393,
37566843-37566945,37567322-37567398,37567813-37567860,
37568162-37568311,37568810-37569010
Length = 639
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/49 (40%), Positives = 23/49 (46%)
Frame = -2
Query: 719 HLEITKPLNVIAFLTSVFTEPWIGFF*IFRLCRFLANRASFSDRNNSFS 573
HL I + L V + FT PW GF FR LA A FS + S S
Sbjct: 340 HLHIAEALGVPLHI--FFTFPWTGFINEFRKKLKLAPIAYFSTYHGSIS 386
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 283 SLARDLGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEH 441
+L K +KF I +++ ++PD V+ E +V A EK++EH
Sbjct: 200 TLVERAAGVAKNWSEKFGIKMEL--YAPDNNEVEMTEAPLVENATATEKKEEH 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,457
Number of Sequences: 37544
Number of extensions: 393769
Number of successful extensions: 1067
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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