Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00133
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32920.1 68417.m04685 glycine-rich protein                          30   1.4  
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    29   3.3  
At3g05680.1 68416.m00634 expressed protein                             29   3.3  
At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    29   4.4  
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)...    28   5.8  
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    28   5.8  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    28   5.8  
At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger) fa...    28   7.7  

>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 631 DSADSLRTGPVLVIGTTLSPLSSITFLGAVT 539
           +S DS+  G ++V+G+   PLSS++  G++T
Sbjct: 654 ESTDSVAGGGIIVLGSLEHPLSSLSLEGSIT 684


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = +1

Query: 346 DVQHFSPDEISVKTAEGYVVV-----EAKHEEKQDEHGYISR---QFVRKYSLPEGAETA 501
           DV     +E+ V+  +G ++       +++EEK D    + R   +F+R++ LPE A+  
Sbjct: 65  DVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVE 124

Query: 502 NVAPS 516
            V  S
Sbjct: 125 EVKAS 129


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 200  PLTP--DDFLTNMMTPWIVHATSDLGGTRRLWP 292
            P+ P   D L+N  +P+I H T   GG  RL P
Sbjct: 1774 PVIPHSSDSLSNQSSPFISHGTQSSGGPTRLMP 1806


>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = -2

Query: 452 EMYPCSSCFSSCLASTTT*PSAVFTDISSGEKCWTSKLIWNLSFSVLIVEPRSRAKDAVC 273
           ++  C S    C A  +     +F  +      W S L+W   FS  +V    RA   +C
Sbjct: 243 DLITCGSASGVCAAFRSPVGGVLFA-LEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 301

Query: 272 RQGR 261
             G+
Sbjct: 302 NSGK 305


>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 352

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 183 STSLLSRCFLQGHSSSATTILINSNT 106
           S++LL RC+    SSS+TT    SNT
Sbjct: 197 SSALLDRCYDPSSSSSSTTTTTTSNT 222


>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 183 STSLLSRCFLQGHSSSATTILINSNT 106
           S++LL RC+    SSS+TT    SNT
Sbjct: 196 SSALLDRCYDPSSSSSSTTTTTTSNT 221


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1383

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 191 FGMPLTPDDFLTNMMTP--WI 247
           FG P  P+DF  N++TP  W+
Sbjct: 902 FGFPKVPNDFFANLLTPGEWV 922


>At4g13490.1 68417.m02105 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = +2

Query: 143 ECPCKKQRDN------KLVDQDFGMPLTPDDFLTNMMTPWIVH 253
           ECPC +Q +       + VDQ     ++P D LTNM++P  +H
Sbjct: 63  ECPCCRQIEKGKWLFAEPVDQLEEDDMSPLDMLTNMVSPSFLH 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,354,496
Number of Sequences: 28952
Number of extensions: 313393
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)