Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00132
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        29   0.51 
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    28   1.5  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    26   4.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   8.2  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   8.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 239 RLAGTSLPSMWNQRSLKTF-LQHRNSKLLLKRLCQQRVTMKATEKRPSLNWRSLSQLRLA 415
           R+ G   PS   Q+ +    L  +NS++     C Q+ T++  +K    NW  ++ L   
Sbjct: 268 RIIGFDPPSWKTQQMMSHLNLSRKNSEVSKTCKCLQKETIRCNKKSNCYNWNGIAALETY 327

Query: 416 KTSGPLVIGKKK 451
            T   + I  K+
Sbjct: 328 TTECHIQIPDKE 339


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = -3

Query: 707 LWGSNVSLRANPRLSTAESRLYLRTSILASLTVGRIQSLHWSNFVSEAGSDTGVDVHPNN 528
           LWG   S+ +NP L+   S  YL   ++A+L+V  + +LH +   +  G    +D  P N
Sbjct: 165 LWGG-FSV-SNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPLGVTANMDRIPMN 222

Query: 527 RHLM 516
            + +
Sbjct: 223 PYYL 226


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 547 SMYTPITGI*WSAAEALCKRRAHLPEHLRPVILLFSD 437
           S  T + GI     E +C+ +AHLP  L+  + + SD
Sbjct: 139 SYNTDVIGITTDTVENICQWKAHLPRALQFSLPVISD 175


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/31 (22%), Positives = 20/31 (64%)
 Frame = -1

Query: 673 HVYRLQSQGFTSEQVSWLH*QWGASKACIGL 581
           HV++L+ + + +E ++W +  +  ++ CI +
Sbjct: 488 HVFKLEQEEYAAEGLNWSYIDYQDNQQCISM 518


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 673 HVYRLQSQGFTSEQVSWLH*QWGASKACIGL 581
           HV++L+ + +  E + W   ++  ++ CI L
Sbjct: 470 HVFKLEQEEYVKEGLDWRLIEYSDNQGCISL 500


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +1

Query: 172 SHGNATRRDSFGPPTPLEPYPCQTRGDITAIDVEPAFVENFPPAQEFEVTPKALVSATSD 351
           S  N  +   FG   P +P P ++ G    I V+P+  E+  P+     T  +  SA S 
Sbjct: 235 SQENKPKPTPFGSGGPSKPTPFESHGPAKQISVQPS--EHPKPSISTTTTGSSYRSAESS 292

Query: 352 Y 354
           +
Sbjct: 293 H 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,249
Number of Sequences: 5004
Number of extensions: 67122
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)