Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00132
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1425 + 33463039-33463330,33464370-33464460,33465299-334656... 34 0.099
12_01_0419 - 3316866-3318172,3318249-3318360 31 0.70
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 3.7
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 3.7
06_02_0146 - 12274721-12274989,12275090-12275240 29 4.9
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600... 29 4.9
10_07_0162 - 13713504-13714754,13716445-13716522 28 6.5
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 28 6.5
02_03_0168 + 15932050-15932805 28 6.5
01_06_0934 - 33167569-33167720,33167820-33168069 28 6.5
09_02_0444 - 9444340-9444829,9444985-9445688 28 8.6
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 28 8.6
>04_04_1425 +
33463039-33463330,33464370-33464460,33465299-33465656,
33465771-33465944,33466403-33466607,33466717-33466784,
33467279-33467360,33467513-33467549,33467822-33467913,
33469219-33469294,33469402-33469585,33469859-33469867
Length = 555
Score = 34.3 bits (75), Expect = 0.099
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Frame = +1
Query: 262 IDVEPAFVENFPP-------AQEFEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSKN 420
+D+ +++++ PP +Q+F+ P A + DYE + + P +V E N
Sbjct: 257 VDLAKSYMQSLPPWQSPFLGSQKFKTPPSAGLHMY-DYEGKSKYSLPSSKVTTKEEYLSN 315
Query: 421 FWTVSDRKKEVLLDAGALGDVPAVYKVPQQRSIRCRLLGCTSTPVSEPASDTKLDQ 588
FW + + L G+ G P KV Q S RL T + +D K+D+
Sbjct: 316 FWENLEESRRSRL--GSSGSSPDASKVRQYGS-TSRLFE-NDTSIFSSGTDKKVDK 367
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/55 (36%), Positives = 25/55 (45%)
Frame = +1
Query: 208 PPTPLEPYPCQTRGDITAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEE 372
P TP P +T + A EP + P A E E PK S + DY + GEE
Sbjct: 359 PETP--PVESETPAEEQAPVQEPPAADETPAAGEPEEQPKPRSSDSEDYSTSGEE 411
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 309 FLCWRKVFNERWFHIDGSDVPASLARVRFQR 217
F V N RW IDG D+P + V FQR
Sbjct: 432 FFLHHLVLNYRW-RIDGDDIPMAYPYVEFQR 461
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 286 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSKNFWTVSD 438
ENF + E+ KA++ A Y G FPE + ++++NFW V+D
Sbjct: 1180 ENFLSSGGKEILIKAVIQAIPVYVM-GLFKFPESVCDDLTKMTRNFWWVAD 1229
>06_02_0146 - 12274721-12274989,12275090-12275240
Length = 139
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = +1
Query: 250 DITAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSKNFWT 429
D T D + F + F + E K L+ S + P+ V EP+ +
Sbjct: 7 DATVADFDAHFDKLFAAGDDAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIYDRVEAA 66
Query: 430 VSDRKKEVLLDAGALGDVP 486
++K+V+L +GD P
Sbjct: 67 AKGKEKDVVLLRAYVGDKP 85
>01_01_0774 -
6004040-6004371,6004634-6005215,6005391-6005657,
6005845-6006163
Length = 499
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 617 LTVGRIQSLHWSNFVSEAGSDTGVDVHPNNRHLMERC*GT 498
LTV + +H +FV+ G+D V HP N H ME T
Sbjct: 316 LTVDPLLLVH--SFVAGKGADMAVSKHPFNLHTMEEAIAT 353
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 593 GFGCAPLSVKPRYLFGGK 646
GFGCA LS YLFGGK
Sbjct: 174 GFGCAVLSGCYLYLFGGK 191
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +2
Query: 593 GFGCAPLSVKPRYLFGGK 646
GFGCA LS YLFGGK
Sbjct: 244 GFGCAVLSGCYLYLFGGK 261
>02_03_0168 + 15932050-15932805
Length = 251
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 247 GDITAIDVEPAFVENFPPAQEF-EVTPKALVSATSDYE----SDGEEAFPELEVPEPIEV 411
GDI+A+ EP+ E P A EF +V P L S S + S E A+ + + E+
Sbjct: 6 GDISALLSEPSIPEEQPEASEFDDVVPAILESIKSSEKAFKPSPEEAAWADSCFVQTSEL 65
Query: 412 SKNFW 426
S + W
Sbjct: 66 SDSDW 70
>01_06_0934 - 33167569-33167720,33167820-33168069
Length = 133
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 198 VSSRCISMAELASIFP*KA*YDKILKRLRFVRIXRTVDSTN 76
VSS+C+S AE++S P K KI+K F R+ N
Sbjct: 21 VSSKCLSAAEVSSDGPCKTPLLKIMKTCAFTSALRSKPRVN 61
>09_02_0444 - 9444340-9444829,9444985-9445688
Length = 397
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 227 LTRARLAGTSLPSMWNQRSLKTFLQH 304
LTR R A T LP M + R L FL+H
Sbjct: 171 LTRRRRAITPLPEMRSHRCLGAFLKH 196
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Frame = -2
Query: 258 SDVPASLARVRFQRRWRAKGVSS-----RCISMAELASIFP 151
S +PA++A V+ QRR R++G S RC ++A ++I P
Sbjct: 9 SPIPAAIAVVQQQRRGRSRGGGSGAAAVRCSAVAPTSAIAP 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,348,829
Number of Sequences: 37544
Number of extensions: 514346
Number of successful extensions: 1469
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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