Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00132
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)                      31   0.94 
SB_1379| Best HMM Match : FHA (HMM E-Value=3.7e-18)                    30   1.6  
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)                 29   5.0  
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  

>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
          Length = 472

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 510 ALHQMPVIGVYIDPRVRTGFRYKVR 584
           A H++PV+G ++   V  GF Y+VR
Sbjct: 171 AAHELPVVGTFVHQHVVPGFPYRVR 195


>SB_1379| Best HMM Match : FHA (HMM E-Value=3.7e-18)
          Length = 375

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 286 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEP 402
           E  PP+Q+ EVT   L    +D +   EE+FPE+   EP
Sbjct: 21  EMAPPSQQ-EVTKAKLRPLANDNKEKKEESFPEIPYKEP 58


>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +1

Query: 415 KNFWTVSDRKKEVLLDAGALGDVPAVYKVPQQRSIRCRLLGCTSTPVSEPASDTKLDQCR 594
           KN W V  + +E      A+GDV     +PQ+   RC    C+    ++ A  T  D  R
Sbjct: 491 KNAWRVFLKSQEW---QEAIGDVGCEVPLPQETERRCERFVCSLYTSAKKAGVT-ADDVR 546

Query: 595 LWM 603
            WM
Sbjct: 547 YWM 549


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 25/75 (33%), Positives = 41/75 (54%)
 Frame = +1

Query: 238  QTRGDITAIDVEPAFVENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEVPEPIEVSK 417
            +T+ D+T  DVE   V+NF    E    PKAL S TSD +   + A+  +E  E   +  
Sbjct: 1191 KTKKDVTE-DVEMQSVDNFGKVSELVEKPKAL-SNTSDRKPVVKNAW-GVETKEGDIIQN 1247

Query: 418  NFWTVSDRKKEVLLD 462
            N   V++ +K+++L+
Sbjct: 1248 N---VNEEQKKMILN 1259


>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 133 IILSFLREDAR*LSHGNATRRDSFGPPTPLEP 228
           +ILSF    AR  SHG  +RR   G PT   P
Sbjct: 164 LILSFALRFARLESHGERSRRSGGGLPTTFTP 195


>SB_8971| Best HMM Match : efhand (HMM E-Value=2.3e-11)
          Length = 234

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 286 ENFPPAQEFEVTPKALVSATSDYESDGEEAFPELEV 393
           ENFPP +E +   K +V    D   DG+ +  ELEV
Sbjct: 58  ENFPP-EESKQKLKIIVETKIDVNKDGKVSLQELEV 92


>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -2

Query: 447 FFPITNGP---EVFANLNWLRDLQF 382
           FFP +NGP   E  A +NW+RD  F
Sbjct: 202 FFPSSNGPPQPETRAVMNWIRDYPF 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,732,343
Number of Sequences: 59808
Number of extensions: 556458
Number of successful extensions: 1456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)