Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00132
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    31   1.0  
At1g55270.1 68414.m06314 kelch repeat-containing F-box family pr...    29   4.1  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    28   5.4  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    28   5.4  
At4g08593.1 68417.m01414 expressed protein ; expression supporte...    28   7.2  

>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +1

Query: 349 DYESDGEEAFPELEVPEPIEVSKNFWTV----SDRKKEVLLDAGALGDVPAVYKVPQQRS 516
           + E +GE    E  VPEP+EV K         S  K+E+  D  +LG   A   + QQ  
Sbjct: 672 EVEEEGENGLTEDTVPEPVEVQKPHTPKKIRGSSGKREIKWDGESLGKTSAGEPLYQQAL 731

Query: 517 IRCRLL---GCTSTPVSEP 564
           +   ++   G  +  V +P
Sbjct: 732 VGGEMVAVGGAVTLEVDDP 750


>At1g55270.1 68414.m06314 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 4
           [Arabidopsis thaliana] GI:10716953; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 434

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +2

Query: 593 GFGCAPLSVKPRYLFGGK 646
           GFGCA LS    YLFGGK
Sbjct: 170 GFGCAVLSGCHLYLFGGK 187


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from {Mus musculus} SP|P70704, {Bos
            taurus} SP|Q29449; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1107

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 181  NATRRDSFGPPTPLEPYPCQTR 246
            NATRR SFGP TP E +  Q+R
Sbjct: 1073 NATRR-SFGPGTPFEFFQSQSR 1093


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 TGAVLKFYHTKLSKGRCSLTQP-WKCNAKRLLWPSNA 218
           T    KF H  L+K RCS+ +  W  + +RL+  S +
Sbjct: 108 TSFAAKFVHASLNKNRCSINRVLWTPSGRRLITGSQS 144


>At4g08593.1 68417.m01414 expressed protein ; expression supported
           by MPSS
          Length = 270

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
 Frame = +1

Query: 349 DYESDGEEAFPELEVPEPIEVSK----NFWTVSDRKKEVL---LDAGA-LGDVPAVYKVP 504
           D E DGE   P LEV   ++  K    + W +S  +   L   L  G  LG + A Y   
Sbjct: 19  DGEGDGERQNPNLEVGCGLQSCKVATPSVWPISYHEGSALRISLTTGLYLGPLLASYSES 78

Query: 505 QQRSIRCRLLGCTSTPVSEPASDTKLDQCRLWMRPTVSE 621
             R+          TP+ +P    +L Q   W  PTVS+
Sbjct: 79  LSRTHDIASFWIIRTPIKQP--QVRLVQSLTW-PPTVSQ 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,898
Number of Sequences: 28952
Number of extensions: 383508
Number of successful extensions: 1130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)