Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00131
(705 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 161 2e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 154 2e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 153 5e-36
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 146 4e-34
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 133 3e-30
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 124 3e-27
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 121 2e-26
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 119 6e-26
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 118 1e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 114 2e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 103 6e-21
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 91 2e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 83 6e-15
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 81 3e-14
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 77 3e-13
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 77 4e-13
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 73 5e-12
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 73 5e-12
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 66 6e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 66 6e-10
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 63 6e-09
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 62 2e-08
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 60 7e-08
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 59 1e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 55 2e-06
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 54 3e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 54 3e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 54 5e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 5e-06
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 50 7e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 47 5e-04
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 46 0.001
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 46 0.001
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 41 0.026
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 34 3.0
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 34 3.9
UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep: Tran... 34 3.9
UniRef50_A6RSN5 Cluster: Predicted protein; n=1; Botryotinia fuc... 33 6.8
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 33 9.0
UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein, exp... 33 9.0
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.0
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 161 bits (390), Expect = 2e-38
Identities = 74/88 (84%), Positives = 80/88 (90%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV
Sbjct: 7 KHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV*LRR 265
QRL+KVDGKVRTDPTYPAG+MDV+ L +
Sbjct: 67 QRLVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 141 bits (341), Expect = 2e-32
Identities = 63/87 (72%), Positives = 72/87 (82%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
+EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPD
Sbjct: 92 LEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLG 516
PLI NDS+Q+DIA+ KI D+IKF G
Sbjct: 152 PLIHANDSVQVDIASGKITDYIKFDSG 178
Score = 114 bits (274), Expect = 2e-24
Identities = 51/57 (89%), Positives = 53/57 (92%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K
Sbjct: 177 SGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 154 bits (374), Expect = 2e-36
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR IK+DGKVRTD TYPAGFMDV+
Sbjct: 67 QRFIKIDGKVRTDITYPAGFMDVI 90
Score = 143 bits (347), Expect = 3e-33
Identities = 63/87 (72%), Positives = 73/87 (83%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPD
Sbjct: 92 IDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLG 516
PLIKVND+IQ+D+ T KI DFIKF G
Sbjct: 152 PLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 102 bits (244), Expect = 1e-20
Identities = 40/57 (70%), Positives = 52/57 (91%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
+GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K
Sbjct: 177 TGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNK 233
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 153 bits (370), Expect = 5e-36
Identities = 69/84 (82%), Positives = 75/84 (89%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR IK+DGKVRTD TYP GFMDV+
Sbjct: 67 QRFIKIDGKVRTDITYPTGFMDVI 90
Score = 102 bits (244), Expect = 1e-20
Identities = 40/57 (70%), Positives = 52/57 (91%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
+ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K
Sbjct: 209 TSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNK 265
Score = 91.9 bits (218), Expect(2) = 2e-27
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +1
Query: 340 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKF 507
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKF 207
Score = 54.0 bits (124), Expect(2) = 2e-27
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAK 342
I+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 92 IDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 146 bits (355), Expect = 4e-34
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR I+VDGKVRTD TYPAGFMDVV
Sbjct: 67 QRHIQVDGKVRTDKTYPAGFMDVV 90
Score = 127 bits (307), Expect = 2e-28
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
PLIK ND+I+LD+ KI++FIKF +G V
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 91.5 bits (217), Expect = 2e-17
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 133 bits (322), Expect = 3e-30
Identities = 59/92 (64%), Positives = 69/92 (75%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK
Sbjct: 8 HLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKN 67
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV*LRRLMNCF 280
R IK+DGK+RTD YP GFMDV+ + R F
Sbjct: 68 RTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 106 bits (254), Expect = 6e-22
Identities = 45/87 (51%), Positives = 66/87 (75%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP
Sbjct: 92 IPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPH 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLG 516
P ++ ND+I+L++ T KI+DF+KF +G
Sbjct: 152 PELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 90.2 bits (214), Expect = 4e-17
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT+
Sbjct: 178 GNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTE 233
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 124 bits (298), Expect = 3e-27
Identities = 58/92 (63%), Positives = 68/92 (73%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV*LRRLMNCF 280
RL+KVDGKVRT+ YP G MDV+ L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 99 bits (238), Expect = 5e-20
Identities = 42/85 (49%), Positives = 62/85 (72%)
Frame = +1
Query: 262 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 441
K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167
Query: 442 IKVNDSIQLDIATTKIMDFIKFGLG 516
++V+D+++ +I T ++ IKF +G
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVG 192
Score = 69.7 bits (163), Expect = 6e-11
Identities = 30/53 (56%), Positives = 41/53 (77%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 671
G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 192 GDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGE 244
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 121 bits (291), Expect = 2e-26
Identities = 56/84 (66%), Positives = 63/84 (75%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++
Sbjct: 4 KHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILR 63
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
Q L+ VD R D YPAGFMDVV
Sbjct: 64 QGLVHVDNHPRRDGKYPAGFMDVV 87
Score = 83.0 bits (196), Expect = 6e-15
Identities = 41/90 (45%), Positives = 53/90 (58%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPD
Sbjct: 89 IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
P + D+I ++ K +D IK G V
Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
Score = 69.7 bits (163), Expect = 6e-11
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 671
G ++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK
Sbjct: 175 GKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 119 bits (287), Expect = 6e-26
Identities = 59/84 (70%), Positives = 66/84 (78%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI
Sbjct: 18 QHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKKICM 76
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
Q IKVDGK+RTD P MDV+
Sbjct: 77 QWFIKVDGKIRTDNNLPYWIMDVI 100
Score = 107 bits (256), Expect = 3e-22
Identities = 52/109 (47%), Positives = 67/109 (61%)
Frame = +1
Query: 226 LSCWIYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 405
L WI I+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 406 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV*SREAVTWG 552
HD T+R+PD LIKVND+IQ+D+ T KI +KF G WG
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 68.9 bits (161), Expect = 1e-10
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
+GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG K
Sbjct: 186 TGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNK 238
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 118 bits (285), Expect = 1e-25
Identities = 54/69 (78%), Positives = 59/69 (85%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI
Sbjct: 7 KHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRM 66
Query: 182 QRLIKVDGK 208
Q IK+DGK
Sbjct: 67 QHFIKMDGK 75
Score = 118 bits (284), Expect = 1e-25
Identities = 51/75 (68%), Positives = 61/75 (81%)
Frame = +1
Query: 292 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 471
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 472 IATTKIMDFIKFGLG 516
+ T KI DF KF G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 98.3 bits (234), Expect = 2e-19
Identities = 38/55 (69%), Positives = 50/55 (90%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 674
+GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGKG
Sbjct: 149 TGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 203
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 114 bits (275), Expect = 2e-24
Identities = 52/91 (57%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+
Sbjct: 92 IKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPN 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGT-CV 525
LIK NDSI LD+ K++DFIKF +G+ CV
Sbjct: 152 LLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 113 bits (273), Expect = 3e-24
Identities = 50/84 (59%), Positives = 64/84 (76%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K
Sbjct: 7 KHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILK 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
+ I VDGKVR D +PAG MDV+
Sbjct: 67 KNEIYVDGKVRADKNFPAGVMDVI 90
Score = 59.3 bits (137), Expect = 9e-08
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKGTK
Sbjct: 178 GSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTK 233
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 103 bits (246), Expect = 6e-21
Identities = 43/81 (53%), Positives = 60/81 (74%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+
Sbjct: 204 IEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 263
Query: 436 PLIKVNDSIQLDIATTKIMDF 498
P IK+ D+++ D+ KI +F
Sbjct: 264 PEIKIGDTLKYDLVNNKIENF 284
Score = 81.4 bits (192), Expect = 2e-14
Identities = 54/124 (43%), Positives = 67/124 (54%), Gaps = 31/124 (25%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLD-------------------------KLGGVY----APRPSTGPHK 94
KHLKR+NAPK+WML+ KL +Y A RPS GPHK
Sbjct: 88 KHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPSQGPHK 147
Query: 95 LRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAGFMDVV*LRRL 268
LRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G MDVV + +
Sbjct: 148 LRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKT 207
Query: 269 MNCF 280
F
Sbjct: 208 DQSF 211
Score = 79.4 bits (187), Expect = 8e-14
Identities = 33/57 (57%), Positives = 43/57 (75%)
Frame = +3
Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
SGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+G K
Sbjct: 289 SGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKK 345
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 91.1 bits (216), Expect = 2e-17
Identities = 41/83 (49%), Positives = 56/83 (67%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ +
Sbjct: 8 HLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAE 67
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
+ IKV+G+VRT+ +P G DVV
Sbjct: 68 KNIKVNGRVRTNSHFPVGLFDVV 90
Score = 70.5 bits (165), Expect = 4e-11
Identities = 33/82 (40%), Positives = 56/82 (68%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
IEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ D
Sbjct: 92 IEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCD 150
Query: 436 PLIKVNDSIQLDIATTKIMDFI 501
P I + +I++ T+K++++I
Sbjct: 151 PAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 83.0 bits (196), Expect = 6e-15
Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 178
+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+
Sbjct: 10 RHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKII 69
Query: 179 KQRLIKVDGKVRTDPTYPAGFMDVV*LRR 265
+ I VDG VR +P +P G MDVV + R
Sbjct: 70 TRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 33.5 bits (73), Expect = 5.2
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRY 429
I +T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 96 IPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEI 155
Query: 430 PDP------LIKVNDSIQLDI------ATTKIMDFIKFGLGTCV 525
DP + V DS+ L++ + K++D I F G V
Sbjct: 156 EDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWV 199
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 81.0 bits (191), Expect = 3e-14
Identities = 40/84 (47%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
+ +KVDG VR D +P G MDV+
Sbjct: 63 RGYVKVDGVVRRDYKFPVGLMDVI 86
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 77.4 bits (182), Expect = 3e-13
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
+KVDGKVR D YP G MDV+
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVI 85
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 77.0 bits (181), Expect = 4e-13
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 8 KHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQ 67
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
I +DG R + +PAG MDV+
Sbjct: 68 TGKILIDGLKRKEYKHPAGLMDVL 91
Score = 37.9 bits (84), Expect = 0.24
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 671
G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 185 GKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 73.3 bits (172), Expect = 5e-12
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
+HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+
Sbjct: 10 RHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILA 69
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
R+I+VDG+V TD +P G MDV+
Sbjct: 70 SRVIEVDGRVVTDYKFPVGLMDVL 93
Score = 35.9 bits (79), Expect = 0.97
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +1
Query: 277 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 435
+R++ D + I PEEA YKL +++R T HDGR + Y
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161
Query: 436 PL-IKVNDSIQLDIATTKIMDFIKFGLGT 519
+ K D++ + I I+ + F +GT
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGT 190
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 73.3 bits (172), Expect = 5e-12
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
+ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++
Sbjct: 8 RRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLIS 67
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
+ +VDG VR D +P GFMDV+
Sbjct: 68 EGHFRVDGVVRKDYKFPVGFMDVI 91
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 668
G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 187 GAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 66.5 bits (155), Expect = 6e-10
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
+ VDGKVR D Y G D +
Sbjct: 65 GKVLVDGKVRKDYRYTVGMFDTI 87
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 66.5 bits (155), Expect = 6e-10
Identities = 30/84 (35%), Positives = 44/84 (52%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 8 KHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIIN 67
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
+ VDG+V D +P GFMD++
Sbjct: 68 SGNVLVDGRVIKDYKFPVGFMDII 91
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ + +
Sbjct: 93 IPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDE 150
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
V D I L + +I + + G CV
Sbjct: 151 NDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 63.3 bits (147), Expect = 6e-09
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
+ VDGKVR D YP G MDVV
Sbjct: 63 GKVLVDGKVRRDYKYPVGLMDVV 85
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 61.7 bits (143), Expect = 2e-08
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
R + VDG++ TD G MDV+
Sbjct: 65 RQVLVDGRIETDLGRGVGLMDVL 87
Score = 35.9 bits (79), Expect = 0.97
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 277 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 453
FR I DV G+ I+ + A KLC+V +T + HDGR I D L
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153
Query: 454 DSIQLDIATTKIMDFIKFGLG 516
D++ + + + F G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 59.7 bits (138), Expect = 7e-08
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
+ VDG R D +P G MD++
Sbjct: 64 GNVLVDGVARKDLRFPVGLMDII 86
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
+ VDG R D +P G DV+
Sbjct: 63 GKVLVDGISRKDLRFPVGLFDVI 85
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/81 (33%), Positives = 44/81 (54%)
Frame = +2
Query: 11 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 190
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 191 IKVDGKVRTDPTYPAGFMDVV 253
+ ++G + TD D++
Sbjct: 64 VLLNGHIVTDEHIGIDVFDII 84
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 54.4 bits (125), Expect = 3e-06
Identities = 25/91 (27%), Positives = 49/91 (53%)
Frame = +2
Query: 11 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 190
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 191 IKVDGKVRTDPTYPAGFMDVV*LRRLMNCFV 283
+KVDG++ D +P GFMDV+ + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 34.7 bits (76), Expect = 2.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 283 LIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 459
++YD KG+ I + P KL K VK+ G + L HDG+TI I +D
Sbjct: 98 IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDRKDINTSDV 156
Query: 460 IQLDIATTKIMDFIKFGLG 516
+ + I +I + +K G
Sbjct: 157 LLMKIPDLEIENVLKIAEG 175
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 178
+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 7 RHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLL 66
Query: 179 KQRLIKVDGKVRTDPTYPAGFMDVV 253
+ VDG+ D +P G DV+
Sbjct: 67 NNGKVLVDGRPIKDYKFPVGLFDVL 91
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 53.6 bits (123), Expect = 5e-06
Identities = 30/89 (33%), Positives = 48/89 (53%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV*LRRL 268
QR + V+G+ D G D+V + +L
Sbjct: 62 QRDVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 38.3 bits (85), Expect = 0.18
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGK 671
GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G+
Sbjct: 177 GNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGR 231
Score = 33.9 bits (74), Expect = 3.9
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +1
Query: 238 IYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 417
++ I K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 418 TIRYPDPLIKVNDSIQLDIAT 480
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 53.6 bits (123), Expect = 5e-06
Identities = 31/88 (35%), Positives = 43/88 (48%)
Frame = +1
Query: 253 LIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 432
+IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 85 VIEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITD 144
Query: 433 DPLIKVNDSIQLDIATTKIMDFIKFGLG 516
D KV D + + KI + IK G
Sbjct: 145 DKSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 46.8 bits (106), Expect = 5e-04
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +2
Query: 11 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 190
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 191 IKVDGKVRTDPTYPAGFMDVV 253
+KVDGK + + GFMDV+
Sbjct: 66 VKVDGKTVREKKFAVGFMDVI 86
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 49.6 bits (113), Expect = 7e-05
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +2
Query: 5 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 184
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 185 RLIKVDGKVRTDPTYPAGFMDVV 253
+ ++GK +D P G D++
Sbjct: 63 DNVLINGKAISDEERPVGMFDIL 85
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 46.8 bits (106), Expect = 5e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 268 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 447
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++ IK
Sbjct: 96 NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155
Query: 448 VNDSIQLDIATTKIMDFIKFGLGT-CV*SR 534
V DS+ + +I+ +KF +G+ C+ +R
Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 40.7 bits (91), Expect = 0.034
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KH KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 7 KHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVK 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
+ V+GK +P MD +
Sbjct: 67 TGFLYVNGKKCLSHKFPISLMDTI 90
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 671
G+LC+IT G++LG + I + ++H++ G + +++ +IG+
Sbjct: 178 GSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGE 230
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/84 (32%), Positives = 37/84 (44%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
++VDG RT + G MDVV
Sbjct: 68 SGNVEVDGVKRTSLHHGIGLMDVV 91
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +2
Query: 11 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 190
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 191 IKVDGKVRTDPTYPAGFMDVV 253
+ VDGKV + GFMD +
Sbjct: 66 VMVDGKVVKERRRGIGFMDTL 86
Score = 33.1 bits (72), Expect = 6.8
Identities = 25/79 (31%), Positives = 34/79 (43%)
Frame = +1
Query: 289 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 468
YD KG+ I E KL +VK + HDG T+ IK DS+ +
Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156
Query: 469 DIATTKIMDFIKFGLGTCV 525
I +I+D +KF G V
Sbjct: 157 KIPKKEIVDVLKFAPGNRV 175
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 41.1 bits (92), Expect = 0.026
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = -1
Query: 519 SSQTKLDEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVL 340
S+ +LD + +L DV +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 339 SLLRGDTVDCESALNIID*TKQFISLLN 256
D V ES+L ++D + FI+L +
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIALFD 189
Score = 37.5 bits (83), Expect = 0.32
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 665 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQ 519
D EHV + R + ++ GVL VHN EG + LA D V + DH Q
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQ 101
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 34.7 bits (76), Expect = 2.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 503 SLVWELVY--DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGH 676
+LV +LV DH R A HR R RL + H+G+ L+H++EQ +G
Sbjct: 50 TLVQQLVSGEDHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQ 109
Query: 677 E 679
+
Sbjct: 110 K 110
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 34.3 bits (75), Expect = 3.0
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -1
Query: 675 CPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWCPHAPSYGL 535
C CR R RRC PWSP CAQ C + RDV +G C P Y L
Sbjct: 144 CRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARCECRPGYRL 193
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 253 DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 89
+NI + I + N P E LFH F DFVSG ++ I + + + +AQ +
Sbjct: 58 ENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112
>UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep:
Transposase - Rhodococcus sp. (strain RHA1)
Length = 384
Score = 33.9 bits (74), Expect = 3.9
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 468 RHRNYEDYGLHQVWSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 617
R ++ +D + W G+L I G RNL +GT+V ER G+ +VH+ D
Sbjct: 223 RPKDVKDRAVPGHWEGDL--IVGKRNLSAIGTLV--ERSTGTVMLVHLPD 268
>UniRef50_A6RSN5 Cluster: Predicted protein; n=1; Botryotinia
fuckeliana B05.10|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 1091
Score = 33.1 bits (72), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 414 PHH-PLPRPTYQSQRFHPVRHRNYEDYGLHQVWSG 515
PH P+ P +S+RF P HRNY D ++ ++G
Sbjct: 631 PHQSPILSPRSRSERFPPDEHRNYLDASINNAYNG 665
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 32.7 bits (71), Expect = 9.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 533 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEAY 685
G+P + A HRV +E + R H+ + H+ EQ RVH R G E +
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEGH 368
>UniRef50_Q2R2L4 Cluster: Leucine Rich Repeat family protein,
expressed; n=3; Oryza sativa|Rep: Leucine Rich Repeat
family protein, expressed - Oryza sativa subsp. japonica
(Rice)
Length = 1026
Score = 32.7 bits (71), Expect = 9.0
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 377 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 490
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.0
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +2
Query: 38 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 199
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,621,708
Number of Sequences: 1657284
Number of extensions: 18304437
Number of successful extensions: 57710
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 54411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57651
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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