Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00131
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 143 2e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 143 2e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 142 4e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.86
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.0
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 27 2.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.5
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.6
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 6.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 8.0
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 8.0
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 25 8.0
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPD
Sbjct: 92 VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKF 507
PLIKVND+I+L++ T KI FIKF
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKF 175
Score = 141 bits (341), Expect = 1e-34
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 7 KHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QRLIKVDGKVRTD T+P GFMDV+
Sbjct: 67 QRLIKVDGKVRTDSTFPTGFMDVI 90
Score = 79.4 bits (187), Expect = 5e-16
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = +3
Query: 525 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPD
Sbjct: 92 VEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKF 507
PLIKVND+I+L++ T KI FIKF
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKF 175
Score = 139 bits (337), Expect = 3e-34
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 7 KHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QRLI+VDGKVRTD T+P GFMDV+
Sbjct: 67 QRLIQVDGKVRTDSTFPTGFMDVI 90
Score = 80.2 bits (189), Expect = 3e-16
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = +3
Query: 525 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGK 233
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 142 bits (344), Expect = 4e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPD
Sbjct: 92 VDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKF 507
PLIKVND+I+L++ T KI FIKF
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKF 175
Score = 141 bits (341), Expect = 1e-34
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+
Sbjct: 7 KHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QRLIKVDGKVRTD T+P GFMDV+
Sbjct: 67 QRLIKVDGKVRTDSTFPTGFMDVI 90
Score = 79.4 bits (187), Expect = 5e-16
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = +3
Query: 525 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 662 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 564
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 238 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 83
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 340 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGL 513
K+ C V+R TG +L+ HD Y ++ + I DI++TK+ FI+ G+
Sbjct: 271 KFGCCIVER--TGSDVWAFLLAHD-IMFAYRGNILVIKQLIYNDISSTKVRLFIRRGM 325
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 444 QSQRFHPVRHRNYED 488
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 411 WPHHPLPRPTYQSQR 455
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/86 (23%), Positives = 33/86 (38%)
Frame = -2
Query: 317 WIVNLPLTS*IRRNSSLVFSIRQHP*IQQDK*GQS*LSHQPL*GVVSQFSGLRFRSKHTS 138
W+V + SL+ P ++ K G + + G + + L ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296
Query: 137 DDSSGKSPGASTRATCGDRLTVSVHT 60
SP AST ++ V HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 414 PHHPLPRPTYQSQRFHPVRHRNYEDY 491
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 571 PARDIPAPSTLCTSRTPRDTPSPRG*TTCS*SARARSVHLAAARQ 705
P IP T + P DTP+P SAR R+ ARQ
Sbjct: 250 PTTSIPEHKTSINNNKPEDTPTPS--ENVHLSARQRNALKRKARQ 292
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 339 SLLRGDTVDCESALNIID*TKQ 274
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -3
Query: 259 QLDNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSIL 140
Q +N S++ P I+LY L+H+ +++ Q ++
Sbjct: 399 QYENSLSLLETSKIDPRVVISLYPDLYHSELSYIAFQGVI 438
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +1
Query: 235 WIYGCCLIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK-RVATGPKNVPYLVTHD 411
W C I + F + G + +I K LC V T PKN Y+V
Sbjct: 32 WCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASG 91
Query: 412 GR 417
GR
Sbjct: 92 GR 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,432
Number of Sequences: 5004
Number of extensions: 71374
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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