Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00131
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 144 6e-35
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 144 6e-35
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 144 6e-35
11_06_0087 - 19919224-19922304 33 0.29
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.89
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 2.1
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 30 2.1
12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028... 25 2.6
12_02_0735 - 22636835-22639502,22639755-22640734 29 2.7
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 29 2.7
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 3.6
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.6
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100... 29 4.8
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.8
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 6.3
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.3
11_06_0560 - 24978894-24979030,24979106-24979310,24979421-249797... 28 8.3
11_01_0465 - 3601377-3601628,3602421-3602496,3603173-3603525 28 8.3
04_04_1303 - 32487174-32487871,32488583-32489123 28 8.3
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 144 bits (349), Expect = 6e-35
Identities = 64/84 (76%), Positives = 72/84 (85%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 23 KHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILM 82
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR + VDGKVRTD TYPAGFMDVV
Sbjct: 83 QRHVMVDGKVRTDKTYPAGFMDVV 106
Score = 126 bits (304), Expect = 2e-29
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPD
Sbjct: 108 IAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPD 167
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
PLIK ND+I++D+ T KI+DFIKF +G V
Sbjct: 168 PLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 84.2 bits (199), Expect = 9e-17
Identities = 35/56 (62%), Positives = 44/56 (78%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF IGK K
Sbjct: 194 GNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERK 249
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 144 bits (349), Expect = 6e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR + VDGKVRTD TYPAGFMDV+
Sbjct: 67 QRHVLVDGKVRTDKTYPAGFMDVI 90
Score = 122 bits (295), Expect = 2e-28
Identities = 53/90 (58%), Positives = 69/90 (76%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
P+IK ND+I++D+ T KI+DFIKF +G V
Sbjct: 152 PIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 87.0 bits (206), Expect = 1e-17
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNK 233
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 144 bits (349), Expect = 6e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR + VDGKVRTD TYPAGFMDV+
Sbjct: 67 QRHVLVDGKVRTDKTYPAGFMDVI 90
Score = 123 bits (297), Expect = 1e-28
Identities = 54/90 (60%), Positives = 69/90 (76%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
PLIK ND+I++D+ T KI+DFIKF +G V
Sbjct: 152 PLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 87.4 bits (207), Expect = 1e-17
Identities = 36/56 (64%), Positives = 45/56 (80%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNK 233
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 377 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 490
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 128 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 27
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 661 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 539
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = -3
Query: 634 KVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDQT**SP*SS 482
K+C V+S S +PG +SRD VP KL P K P+Q P SS
Sbjct: 1554 KLCQVDS---PDSPQPGGISRDADVPKVVKLEVPPESSKEPEQAKKEPASS 1601
>12_02_0656 +
21601782-21601925,21602249-21602460,21602686-21602813,
21602905-21602986,21603308-21603406,21603619-21604054,
21604280-21604350,21604438-21604523,21604740-21604750
Length = 422
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -2
Query: 632 GVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRPNLMKSIIFVVAMSNWMES 453
GV + VL+VH G+ ++ GAH Q A Q ++ I+FV + +
Sbjct: 105 GVMKAVLNVHITNGSETAVIALWGAHDTQFHAENLQQQADHGPVV--ILFVGLTVKFRDH 162
Query: 452 LTLISGS 432
+ GS
Sbjct: 163 QLALQGS 169
Score = 23.4 bits (48), Expect(2) = 2.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 353 HNLYLASSGVIRWIVNLPLTS*IRRNSSLV 264
H L L S V RW N P+ I SS +
Sbjct: 162 HQLALQGSTVCRWYPNAPIQETISLISSAI 191
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 673 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 578
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 705 LPRGSEMYASCPCRL*TRCSTSWRRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 541
LP+ E YA R + +RC+P S A +CR+SR S+ W P+ S+
Sbjct: 400 LPKLVESYARDARLSPERLVDAVQRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 673 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 578
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 141 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 13
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>09_06_0171 -
21308993-21309671,21309768-21309862,21309944-21310084,
21310177-21310348,21310445-21310548,21311254-21311370
Length = 435
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 292 HRLDETVH*SSQLDNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQ 149
H DE + +L ++ K++ SRV PN P++ YE L F+ SG+
Sbjct: 388 HSEDEEKE-NHELPDLPKANLSSRVHPNMPLD-YETLTARFEALKSGK 433
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 25 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 189
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +1
Query: 559 APSCPARDI--PAPSTLCTSRTPRDTPSP 639
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 640 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 509
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 277 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 381
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>11_06_0560 -
24978894-24979030,24979106-24979310,24979421-24979748,
24980024-24980116,24980287-24980406,24982786-24982916
Length = 337
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 599 VEGAGMSLAGHDGAH-TPQVTASRDHTQVPRPN 504
+E AG G G H +P A+RDH Q+P+ N
Sbjct: 1 MEHAGGEPPGGGGDHVSPPAAATRDHQQLPQVN 33
>11_01_0465 - 3601377-3601628,3602421-3602496,3603173-3603525
Length = 226
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +3
Query: 456 FHPVRHRNYEDYGLHQVWSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHT 632
F H E + VW+ M R+ R G +VSR RH + + I D + HT
Sbjct: 124 FEDTNHLAKECSFTNLVWNQGTSMGVNTRSNRRRGDMVSRNRHQYTPPDIDIGDKSRHT 182
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 644 PRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPR 510
P GE ++R VL V AG++ G H P + R T+ P+
Sbjct: 170 PGGEEIARSVLRVR----AGLACRGTQAFHPPDIHRGRAATRTPK 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,843,251
Number of Sequences: 37544
Number of extensions: 546941
Number of successful extensions: 1734
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -