Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00131
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             163   9e-41
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.9  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     29   4.9  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      28   8.5  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  163 bits (397), Expect = 9e-41
 Identities = 74/84 (88%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
           KH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVK
Sbjct: 431 KHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVK 490

Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
           QRLIK+DGKVRTD TYPAGFMDVV
Sbjct: 491 QRLIKIDGKVRTDTTYPAGFMDVV 514



 Score =  132 bits (319), Expect = 3e-31
 Identities = 59/87 (67%), Positives = 71/87 (81%)
 Frame = +1

Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
           I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPD
Sbjct: 516 IDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPD 575

Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLG 516
           P IKVND++ +DI T K++D+IKF  G
Sbjct: 576 PNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 38/57 (66%), Positives = 48/57 (84%)
 Frame = +3

Query: 510 SGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
           +GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K
Sbjct: 601 TGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNK 657


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 127 EES--SEVCFDRKRSPENCE 180
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 481 TKIMDFIKFGLGTCV*SREAVTWGVWAP-SCPARDIPA-PSTLCTSRTPRDTPSPRG*TT 654
           TKI   I+ G GT   +  A   GV  P   P+   PA PS+  T+ T R T  PRG T+
Sbjct: 15  TKIHKPIQGGGGTTTTASPAT--GVVKPRGAPSAKPPATPSSSKTTSTARSTVKPRGTTS 72

Query: 655 CS*SA 669
            + SA
Sbjct: 73  AASSA 77


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 204 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 88
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +2

Query: 596 RHCAHQGLHGTHLRHEV---EQRVHNRQGHEAY 685
           +H  H+  HGTH +H V   E+   +RQ H  Y
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTY 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,738,208
Number of Sequences: 59808
Number of extensions: 602030
Number of successful extensions: 1747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)