Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00131
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 128 4e-30
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.4
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.2
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.2
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 29 4.3
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 29 4.3
U64848-15|AAB04891.1| 384|Caenorhabditis elegans Hypothetical p... 28 5.7
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 5.7
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot... 28 7.5
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot... 28 7.5
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 128 bits (309), Expect = 4e-30
Identities = 61/93 (65%), Positives = 70/93 (75%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+
Sbjct: 6 KHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILT 65
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV*LRRLMNCF 280
QR+++VDGKVRT +P GFMDVV + R F
Sbjct: 66 QRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98
Score = 115 bits (276), Expect = 4e-26
Identities = 53/87 (60%), Positives = 64/87 (73%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYPD
Sbjct: 91 IERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPD 150
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLG 516
P +KVND+I +I+T KI D +KF G
Sbjct: 151 PHVKVNDTIVFNISTQKITDSVKFEPG 177
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GNL +TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG K
Sbjct: 177 GNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNK 232
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 301 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 432
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = +2
Query: 530 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE 679
HG G+ G H T L H H G HGTH H H+ HE
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHE 694
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/42 (28%), Positives = 16/42 (38%)
Frame = +2
Query: 557 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEA 682
G H P H H HG H H ++ H+ GH +
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHS 719
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 518 LVYDHGRP*LGACGHHRVPRETSRLLRH 601
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 518 LVYDHGRP*LGACGHHRVPRETSRLLRH 601
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 417 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 500
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 259 QLDNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 113
Q N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 207 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 259 QLDNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 113
Q N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 229 QQQNYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277
>U64848-15|AAB04891.1| 384|Caenorhabditis elegans Hypothetical
protein C50E3.13 protein.
Length = 384
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -2
Query: 647 QPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRPNL 501
Q R E V GV ++ E A L PQV + D+ QVP PNL
Sbjct: 26 QERVEPVLEGVPQPNDQESADEDLTARQPPIQPQVPNASDNLQVP-PNL 73
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 458 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 294
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase
protein.
Length = 1262
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 548 QVTASRDHTQVPRPNLMKSIIFVVAMSNWM 459
QV RD + PRPN++++ IF + + W+
Sbjct: 499 QVLMHRDSSVRPRPNIIQNEIFGMCVIRWL 528
>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein
1 protein.
Length = 1262
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 548 QVTASRDHTQVPRPNLMKSIIFVVAMSNWM 459
QV RD + PRPN++++ IF + + W+
Sbjct: 499 QVLMHRDSSVRPRPNIIQNEIFGMCVIRWL 528
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,402,669
Number of Sequences: 27780
Number of extensions: 426387
Number of successful extensions: 1359
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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