Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00131
(705 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 146 9e-36
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 146 9e-36
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 146 9e-36
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.74
At1g29760.1 68414.m03639 expressed protein 31 0.74
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.3
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.0
At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase) domai... 29 3.0
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.0
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.0
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara... 28 6.9
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 6.9
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ... 27 9.2
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 27 9.2
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 27 9.2
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 27 9.2
At2g32540.1 68415.m03975 cellulose synthase family protein simil... 27 9.2
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 146 bits (355), Expect = 9e-36
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR I+VDGKVRTD TYPAGFMDVV
Sbjct: 67 QRHIQVDGKVRTDKTYPAGFMDVV 90
Score = 128 bits (308), Expect = 5e-30
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
PLIK ND+I+LD+ KI++FIKF +G V
Sbjct: 152 PLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 146 bits (355), Expect = 9e-36
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR I+VDGKVRTD TYPAGFMDVV
Sbjct: 67 QRHIQVDGKVRTDKTYPAGFMDVV 90
Score = 127 bits (307), Expect = 6e-30
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
PLIK ND+I+LD+ KI++FIKF +G V
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 146 bits (355), Expect = 9e-36
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +2
Query: 2 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 181
KHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+
Sbjct: 7 KHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILM 66
Query: 182 QRLIKVDGKVRTDPTYPAGFMDVV 253
QR I+VDGKVRTD TYPAGFMDVV
Sbjct: 67 QRHIQVDGKVRTDKTYPAGFMDVV 90
Score = 127 bits (307), Expect = 6e-30
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = +1
Query: 256 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 435
I KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPD
Sbjct: 92 IPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPD 151
Query: 436 PLIKVNDSIQLDIATTKIMDFIKFGLGTCV 525
PLIK ND+I+LD+ KI++FIKF +G V
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 91.5 bits (217), Expect = 5e-19
Identities = 39/56 (69%), Positives = 47/56 (83%)
Frame = +3
Query: 513 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 680
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.74
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 108 KHSRNLWGPVDGLGAYTPPSLSNIHAL 28
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 219 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 127
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 673 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 578
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 673 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 578
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g42160.1 68415.m05218 zinc finger (ubiquitin-hydrolase)
domain-containing protein similar to BRCA1-associated
protein 2 [Homo sapiens] GI:3252872; contains Pfam
profile PF02148: Zn-finger in ubiquitin-hydrolases and
other protein
Length = 488
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 527 HTQVPRPNLMKSIIFVVAMSNWMESLTLI 441
H+ +P P+ + +F+VA+ N++ SL I
Sbjct: 59 HSSLPNPSSRSTTLFIVAVPNYLSSLDFI 87
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 198 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 82
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 673 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 578
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
[Arabidopsis thaliana] GI:4894914; contains Pfam profile
PF02416: mttA/Hcf106 family
Length = 260
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +1
Query: 376 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFGLGTCV*SREAVTWGV 555
GPK + + + G+T+R P I+ + D +T + + T + T V
Sbjct: 106 GPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTPNVYNQNRTNPV 165
Query: 556 W-APSCPARDIPAPSTLCTSRTPRDTPSPRG*TT 654
P P +P+ T+ P D+ SP+ T+
Sbjct: 166 QPPPPPPPPSVPSTEAPVTANDPNDSQSPKAYTS 199
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 673 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 578
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
glutamine phosphoribosylpyrophosphate amidotransferase,
putative / phosphoribosyldiphosphate 5-amidotransferase,
putative similar to amidophosphoribosyltransferase
[Arabidopsis thaliana] GI:469195; contains Pfam profiles
PF00156: Phosphoribosyl transferase domain, PF00310:
Glutamine amidotransferases class-II
Length = 532
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +3
Query: 459 HPVRHRNYEDYGLHQVWSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 638
H ++HR E G+ L ITG + V T PG I H++ ST + A
Sbjct: 97 HALQHRGQEGAGIVAANQNGLESITGVGLVSDVFTESKLNNLPGDIAIGHVRYST--SGA 154
Query: 639 TRLNNV 656
+ L NV
Sbjct: 155 SMLKNV 160
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 131 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 229
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 131 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 229
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 131 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 229
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 736
>At2g32540.1 68415.m03975 cellulose synthase family protein similar
to cellulose synthase catalytic subunit from Arabidopsis
thaliana [gi:5230423], cellulose synthase-5 from Zea
mays [gi:9622882]
Length = 755
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 685 VRFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGC 581
VR PL ++NT+ +L+A P L C +S + GC
Sbjct: 105 VREPPLIVVNTVLSLLAVNYPANKLACYVS-DDGC 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,782
Number of Sequences: 28952
Number of extensions: 404233
Number of successful extensions: 1184
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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