Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00130
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.2  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   7.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   9.6  

>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +1

Query: 289 LINCVLLKFTNIYSRRFSQDISHRTLRSSSKI*HGL 396
           L+  + L+  N Y+  +SQD+   T R++S++ HG+
Sbjct: 229 LVGHIPLRAAN-YANEYSQDVPASTHRAASELVHGV 263


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 157 LPLTYRGRDVFIQLLYTI*FRSLYAMLL*SINLKRVCDVLL 35
           L   +R  DVF Q    I       ++L S+NLK VCD+ L
Sbjct: 304 LAAVFRNPDVF-QTNVKIRKGQAVQIILHSVNLKNVCDLFL 343


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 550 YIK*NGSGHFISRNKRIRRTLDNYVFAVRTISFDD*TVPY 431
           Y+  NG GHF+      +   D YV    TI+  +  VP+
Sbjct: 411 YLSDNGDGHFVLAGDGNQTIGDFYVMNWTTIASGEYLVPF 450


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 179 FFRFLFTMMTNRKFSIALFLWYWDVNDVSSSDLRFIY*SIAFY 307
           FF F F     R+F IA+F+  +D N V      F +   +F+
Sbjct: 78  FFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFF 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,966
Number of Sequences: 5004
Number of extensions: 52417
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)