Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00130
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.4 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
 Frame = +2

Query: 233 FLWYWDVNDVSSSDLRFIY*SIAFY*SLPIFIQDGFHKTLVIGH*GVARRFSMVSLKLFN 412
           FLW W +N + + ++  IY     Y    IF  + + K   +GH GV          L  
Sbjct: 265 FLWEWSINGIDNREIECIY--SKTYKEFSIFYSEEYQK---LGH-GVPENNKSEETTLCT 318

Query: 413 GFYSFKI-RHCLVIE--ANRSDSKNIV-IQGTS 499
             +S K+ ++ L+++   N  + K+I  +Q TS
Sbjct: 319 SEHSSKVLQNALLMKNILNHLERKDICRLQRTS 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,775
Number of Sequences: 27780
Number of extensions: 277218
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)