Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00129
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 136 3e-33
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 128 6e-31
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 114 1e-26
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 111 9e-26
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 87 2e-18
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 54 2e-08
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 44 2e-05
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.36
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.36
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.83
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.8
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 7.7
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 7.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.7
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 7.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 136 bits (329), Expect = 3e-33
Identities = 62/89 (69%), Positives = 73/89 (82%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSI 420
P FDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SS+
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFN 507
VL KM+ETAEAYLG V +AV+TVPAYFN
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPAYFN 149
Score = 117 bits (281), Expect = 2e-27
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = +2
Query: 71 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 250
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 251 T 253
T
Sbjct: 64 T 64
Score = 99.1 bits (236), Expect = 5e-22
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGT*ERNVLIFDLGGGTFDVSSL 683
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS L
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLL 208
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 128 bits (310), Expect = 6e-31
Identities = 58/89 (65%), Positives = 71/89 (79%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSI 420
P FDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SS+
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFN 507
VL KM+E+AEA+LG V +AV+TVPAYFN
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPAYFN 149
Score = 117 bits (281), Expect = 2e-27
Identities = 53/61 (86%), Positives = 58/61 (95%)
Frame = +2
Query: 71 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 250
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 251 T 253
T
Sbjct: 64 T 64
Score = 99.1 bits (236), Expect = 5e-22
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGT*ERNVLIFDLGGGTFDVSSL 683
SQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS L
Sbjct: 151 SQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLL 208
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 114 bits (274), Expect = 1e-26
Identities = 52/89 (58%), Positives = 67/89 (75%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSI 420
P+ FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S++
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFN 507
VLTKMKE +EA L K V+ AVITVPAYF+
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFS 153
Score = 104 bits (250), Expect = 1e-23
Identities = 47/61 (77%), Positives = 53/61 (86%)
Frame = +2
Query: 71 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 250
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 251 T 253
T
Sbjct: 68 T 68
Score = 96.7 bits (230), Expect = 3e-21
Identities = 48/58 (82%), Positives = 50/58 (86%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGT*ERNVLIFDLGGGTFDVSSL 683
SQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS L
Sbjct: 155 SQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLL 212
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 111 bits (267), Expect = 9e-26
Identities = 49/89 (55%), Positives = 69/89 (77%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSI 420
P+ FD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S++
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFN 507
+L+KMK+TAEAYLGK V +AV+TVPAYFN
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPAYFN 182
Score = 102 bits (245), Expect = 4e-23
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = +2
Query: 74 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 253
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Score = 95.1 bits (226), Expect = 8e-21
Identities = 44/58 (75%), Positives = 54/58 (93%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGT*ERNVLIFDLGGGTFDVSSL 683
+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS L
Sbjct: 184 AQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLL 240
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 87.0 bits (206), Expect = 2e-18
Identities = 42/58 (72%), Positives = 49/58 (84%)
Frame = +3
Query: 510 SQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGT*ERNVLIFDLGGGTFDVSSL 683
SQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGTFD+S L
Sbjct: 197 SQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKKN--DAIVAVFDLGGGTFDISIL 252
Score = 83.4 bits (197), Expect = 3e-17
Identities = 39/89 (43%), Positives = 56/89 (62%)
Frame = +1
Query: 241 PQQHKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSI 420
P+ F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGGF 166
Query: 421 VLTKMKETAEAYLGKTVQNAVITVPAYFN 507
+L+KM+ETA YLGK V+NAV+TVPAYFN
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPAYFN 195
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 238
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 239 NPNNT 253
NP NT
Sbjct: 109 NPENT 113
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +2
Query: 59 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 238
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 239 NPNNT 253
N NT
Sbjct: 63 NFRNT 67
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +3
Query: 513 QRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGT*E----RNVLIFDLGGGTFDVS 677
QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G + VS
Sbjct: 156 QRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVS 214
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 265 KRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSIVLTKMKE 441
KRL GR ++D ++ + ++ G KV Y E+ F ++ + TK+K
Sbjct: 72 KRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFTKIKA 131
Query: 442 TAEAYLGKTVQNAVITVPAYFNALK 516
AEA L +V + VI++PA+F ++
Sbjct: 132 IAEAELIGSVSDVVISIPAWFTDIQ 156
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +2
Query: 74 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 253
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Score = 32.3 bits (70), Expect = 0.067
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 382 EDKTFFPEEVSSIVLTKMKETAEAYLGKTVQNAVITVPAYFNALKDK 522
++K E S L ++ E+AE +LG V V++VP YF + K
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRK 180
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 29.9 bits (64), Expect = 0.36
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 74 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 250
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFP-- 82
Query: 251 TNSMPNV 271
+S+ NV
Sbjct: 83 AHSIRNV 89
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +1
Query: 382 EDKTFFPEEVSSIVLTKMKETAEAYLGKTVQNAVITVPAYFNALK 516
+++ + EE+ ++ + AE + + + V+TVP +FN L+
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQ 175
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.36
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 11/154 (7%)
Frame = -1
Query: 662 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRALKYAGTVI 483
+++ + + S SS L T S S+S I S + F S + + I
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 482 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLPPSLT 336
++ T+L + S + +S+ + S +LSS + Y++ ++ +L
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLV 678
Query: 335 TSKGQCFMSACTVASSNLRPMRRLASNLCCWGSS 234
+S +S+ VASS+ P+ +S + + +S
Sbjct: 679 SSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 66 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 161
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 250 HKFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSIVL 426
H+F L G K E T K WP+ ++ ++G +TF EV +L
Sbjct: 1263 HRFYEYLLSGNKDEALTYALQQKQWPYAIIV--AHSIDAKTFQGVVRTFCKSEVKESML 1319
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 52 QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 231
+NGK T +R +S + W P++E R G D + V R + + +EP
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREP- 531
Query: 232 GDEPQQ 249
++P++
Sbjct: 532 -EKPEE 536
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 152 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 48
G W SP S + H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.7
Identities = 22/111 (19%), Positives = 49/111 (44%)
Frame = -1
Query: 662 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRALKYAGTVI 483
T++ V + +S+ V T + +SS ++ S + + ++ ++ + T I
Sbjct: 1549 TSSSVLNSSTPITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 1608
Query: 482 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTS 330
T+ + S + S+ +TSS S+P+ ++ L P +T+S
Sbjct: 1609 TSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSS 1659
Score = 25.4 bits (53), Expect = 7.7
Identities = 23/111 (20%), Positives = 49/111 (44%)
Frame = -1
Query: 662 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRALKYAGTVI 483
T++ V + +S+ V T + +SS ++ S + + ++ ++ + T I
Sbjct: 2269 TSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 2328
Query: 482 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTS 330
T+ V S + S+ +TSS S+P+ ++ L S+T+S
Sbjct: 2329 TSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSS 2379
Score = 25.4 bits (53), Expect = 7.7
Identities = 26/127 (20%), Positives = 57/127 (44%)
Frame = -1
Query: 662 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRALKYAGTVI 483
T++ V + +S+ V T + +SS ++ S + + ++ + + T I
Sbjct: 3241 TSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 3300
Query: 482 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSAC 303
T+ T+ S + S+ +TSS S+P+ ++ +L ++T+S S+
Sbjct: 3301 TSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS--SILNSST 3358
Query: 302 TVASSNL 282
V SS++
Sbjct: 3359 PVTSSSV 3365
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -3
Query: 543 WYLHLLWLVFESIEVRGNRDNCILHSFAKISFGSFLH 433
W L LW + + IE N C+ ++++ + F H
Sbjct: 396 WRLFRLWSLIDDIEPPENIVRCMCNNYSAVGFWRAWH 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,987
Number of Sequences: 5004
Number of extensions: 61277
Number of successful extensions: 251
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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