BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00129 (683 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.6 AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 24 1.6 AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 21 8.3 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 23.8 bits (49), Expect = 1.6 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = +3 Query: 492 SRVLQCSQRQATKDAGTISGLNVLRIINEPTAAAI---AYGLDKKGT*ERNVLI 644 +RVL +++Q GT+ NV R+ ++ T + A G +GT E V++ Sbjct: 528 TRVLPINRKQKVFPNGTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMV 581 >AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. Length = 602 Score = 23.8 bits (49), Expect = 1.6 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 498 VLQCSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 605 VL+ Q +A K A + N II+EPT YG Sbjct: 348 VLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383 >AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc finger domain-Z3 isoform protein. Length = 92 Score = 21.4 bits (43), Expect = 8.3 Identities = 8/15 (53%), Positives = 10/15 (66%) Frame = -1 Query: 59 PFCIFNQSCYLFLKQ 15 P+C N SCY LK+ Sbjct: 9 PYCRRNFSCYYSLKR 23 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 191,858 Number of Sequences: 438 Number of extensions: 4191 Number of successful extensions: 3 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 20830365 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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