Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00128
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0006 + 16257288-16259522 30 2.4
01_06_0456 + 29521282-29522064 30 2.4
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 29 4.3
06_03_0854 + 25400855-25403741,25406174-25407708 29 4.3
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 4.3
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.6
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.4
12_02_0077 - 13288916-13289659,13289689-13289691 28 9.8
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 28 9.8
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 9.8
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 175 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 23
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>01_06_0456 + 29521282-29522064
Length = 260
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 363 AWQC--PRTGSRGSFKRRRAFPPRHHSARLERNTVRPPNYRPRTASA 229
AW+C P +G+RG +RRR P S R R R RP SA
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR-ADRLDTLRPYVTSA 57
>10_08_0267 - 16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -1
Query: 411 TPALFFDRCTAPVKLPAWQCPRTGSRGS-FKRRRAFPPRHHSARLERNTVRPPNYRPRT 238
+PA +R APV WQC GS + R R P R E PPN P T
Sbjct: 912 SPAPPENRTKAPVPPAGWQCRHCGSTETPLWRERDGPAEAEHVRKEET---PPNITPAT 967
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 175 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 50
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 529 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 636
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 304 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 393
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 383 PPQSNSPPGSVLEPDHAGVLNGDE 312
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 118 ESSSTGSSFPADSPKPVPLAVVSLDSR 38
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = -2
Query: 425 ELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRIID 246
E GH + + D N PGS + +H+ VLN + R A+ + P ++
Sbjct: 313 ETQAGHWQNGVLDTLSTQNIIPGSPIAVNHSKVLNAVQEARRAAE-RAY-DVPRVDDKVN 370
Query: 245 RAPLPPNRVSNETMKVVVFQRRSR 174
RA N+ +N V + R
Sbjct: 371 RAVASANKAANAARVAAVKAAQKR 394
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 148 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 41
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,831,320
Number of Sequences: 37544
Number of extensions: 519641
Number of successful extensions: 1682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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