Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00128
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical pr...    28   8.9  
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    28   8.9  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 190  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 71
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 190  FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 71
            F DD  K     ++   S  +   ESSSTGSS  +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468


>Z27080-3|CAA81604.3|  379|Caenorhabditis elegans Hypothetical
           protein F55H2.7 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -1

Query: 417 LRTPALFFDRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPNYRPRT 238
           +RTP  F ++    +         T S  + + + +F  R +SA++ER T R     PR 
Sbjct: 111 VRTPERFLNQMNTWLDRQGKTTSATTSNSTIRGKPSFG-RENSAKIERTTPRLVPRMPRV 169

Query: 237 ASAQPS 220
           +S Q S
Sbjct: 170 SSDQTS 175


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = -1

Query: 351 PRTGSRGSFKRRRAFPPRHHSARLERNTVRPPNYRPRTASAQPSK**NNESSGFSATIAR 172
           PR  SR S +RR   PPR  S   +R   R    R  + S  P +     S   S +  +
Sbjct: 87  PRRRSR-SPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPS-PK 144

Query: 171 NDLPLMLHLSCLLTMP 124
            DL L  ++S   + P
Sbjct: 145 RDLQLRANISVSYSSP 160


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 187 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 71
           +DD   R P + +     L  PY +   SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,482,891
Number of Sequences: 27780
Number of extensions: 402424
Number of successful extensions: 1170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)