Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00128
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.6  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    29   3.6  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    29   3.6  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   4.7  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   8.2  
At3g62370.1 68416.m07006 expressed protein                             28   8.2  
At2g44220.1 68415.m05503 expressed protein  and genefinder conta...    28   8.2  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 154 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 44
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 263 ARRIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 129
           A R+    P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 12  AIRLSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 263 ARRIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 129
           A R+    P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 12  AIRLSSENPTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 386 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 270
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 248 DRAPLPPNRVSNETMKVVVFQRRSRET 168
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 371 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 276
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At2g44220.1 68415.m05503 expressed protein  and genefinder contains
           Pfam profile PF03080: Arabidopsis proteins of unknown
           function
          Length = 393

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 675 NPTLGEFFAMIGRADIEGSKSNVAMNAWLPQASYP 571
           +PTLG  +A++G  + +   + VA+N W P    P
Sbjct: 140 DPTLGHQYALMGVRNGKFYGTEVAINLWKPYVQIP 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,657
Number of Sequences: 28952
Number of extensions: 387611
Number of successful extensions: 1081
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)