Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00126
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   135   4e-33
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   135   4e-33
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   4.9  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  135 bits (327), Expect = 4e-33
 Identities = 59/87 (67%), Positives = 72/87 (82%)
 Frame = -2

Query: 515 SKIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHLVCA 336
           +K +RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  
Sbjct: 18  TKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAH 77

Query: 335 AHSHELPRYGVKVGLTNYAAAYSTGLL 255
           AHS ELPRYG+K GL N+ AAY+TGLL
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLL 104



 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 35/54 (64%), Positives = 44/54 (81%)
 Frame = -1

Query: 171 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAE 10
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIE 186



 Score = 31.5 bits (68), Expect = 0.099
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 565 MGFVKVVKNKQYFKRYQVKSRGVVKGK 485
           M F+K VK+  YF RYQ K R   +GK
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGK 27


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  135 bits (327), Expect = 4e-33
 Identities = 59/87 (67%), Positives = 72/87 (82%)
 Frame = -2

Query: 515 SKIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHLVCA 336
           +K +RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  
Sbjct: 18  TKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAH 77

Query: 335 AHSHELPRYGVKVGLTNYAAAYSTGLL 255
           AHS ELPRYG+K GL N+ AAY+TGLL
Sbjct: 78  AHSSELPRYGIKWGLANWTAAYATGLL 104



 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 35/54 (64%), Positives = 44/54 (81%)
 Frame = -1

Query: 171 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAE 10
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D E
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIE 186



 Score = 31.5 bits (68), Expect = 0.099
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 565 MGFVKVVKNKQYFKRYQVKSRGVVKGK 485
           M F+K VK+  YF RYQ K R   +GK
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGK 27


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 130 QITSKCSWSIVDRFNIVFITCDICCASV*GVKSKSLKQSSCY 255
           +IT   +W++   F I+F  C + CA V G+  +   +SS Y
Sbjct: 446 RITRNLNWNVYLNFIILFSMCFV-CAVVEGIAWRGHSRSSYY 486


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 1   LFPFCIIA--RESFDGMRNIEATVNSTLHSSKDTSTSSGAC*AYIQITS 141
           L P+C+I    +      N    +   L  ++DT T   AC   +QITS
Sbjct: 607 LSPYCLIKFIGDKDSDFENTRLHIVLALSDTEDTPTRLAACGILVQITS 655


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,477
Number of Sequences: 5004
Number of extensions: 53165
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)