Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00126
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 126 1e-29
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 126 1e-29
06_03_0808 - 24799383-24801275 30 1.7
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 28 5.1
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372... 27 8.9
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 8.9
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 126 bits (305), Expect = 1e-29
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = -2
Query: 512 KIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHLVCAA 333
K KRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AA
Sbjct: 20 KFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAA 76
Query: 332 HSHELPRYGVKVGLTNYAAAYSTGLL 255
+SHELPRYG++VGLTNYAAAY TGLL
Sbjct: 77 YSHELPRYGLEVGLTNYAAAYCTGLL 102
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = -1
Query: 255 IARRLLQRXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 76
+ARR+L+ ++Y VEP D FR LDVGL RTTTG RVFGA+K
Sbjct: 103 LARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALK 161
Query: 75 GAVDGGLNVPHSIKRFPGYDAEWKK 1
GA+DGGL++PHS KRF G+ + K+
Sbjct: 162 GALDGGLDIPHSDKRFAGFKKDEKQ 186
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 562 GFVKVVKNKQYFKRYQVKSRGVVKGK 485
GFVK K Y KR+QVK + +GK
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGK 28
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 126 bits (305), Expect = 1e-29
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = -2
Query: 512 KIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHLVCAA 333
K KRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AA
Sbjct: 20 KFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAA 76
Query: 332 HSHELPRYGVKVGLTNYAAAYSTGLL 255
+SHELPRYG++VGLTNYAAAY TGLL
Sbjct: 77 YSHELPRYGLEVGLTNYAAAYCTGLL 102
Score = 78.2 bits (184), Expect = 5e-15
Identities = 41/85 (48%), Positives = 52/85 (61%)
Frame = -1
Query: 255 IARRLLQRXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 76
+ARR+L ++Y VEP D FR LDVGL RTTTG RVFGA+K
Sbjct: 103 LARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALK 161
Query: 75 GAVDGGLNVPHSIKRFPGYDAEWKK 1
GA+DGGL++PHS KRF G+ + K+
Sbjct: 162 GALDGGLDIPHSDKRFAGFKKDEKQ 186
Score = 30.7 bits (66), Expect = 0.95
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 562 GFVKVVKNKQYFKRYQVKSRGVVKGK 485
GFVK K YFKR+QVK + +GK
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGK 28
>06_03_0808 - 24799383-24801275
Length = 630
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 440 CSCPEQRGVYEHNNQFSLHDAS*FYLV 520
CSC G Y+HN +++ + F+L+
Sbjct: 107 CSCNRATGYYQHNTTYAIQELDTFFLI 133
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 8 HSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPVVVRAKPTSK 133
H+A+ L+E T PP + P APK ++P A P SK
Sbjct: 648 HAAATRAQTLVEFSTSAPPPSPPLKAPKPKSPRFPHA-PASK 688
>08_02_1625 +
28336168-28336409,28336491-28336564,28337162-28337236,
28337433-28337459,28339261-28339634,28339746-28340492
Length = 512
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 556 VKVVKNKQYFKRYQVKSRGVVKGKLIIMLVNASL 455
+++ K +YF +YQ + RG++ G LV +L
Sbjct: 268 IRIEKQLRYFNQYQDRVRGLIGGAAARRLVEGAL 301
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 379 WHVTSLLERRTIRRYLGVLY 438
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,978,183
Number of Sequences: 37544
Number of extensions: 351140
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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