Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00126
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             115   3e-26
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          94   7e-20
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   2.2  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   2.2  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_17646| Best HMM Match : DUF1521 (HMM E-Value=0.048)                 28   6.9  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               28   6.9  
SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)                27   9.1  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  115 bits (277), Expect = 3e-26
 Identities = 55/84 (65%), Positives = 62/84 (73%)
 Frame = -1

Query: 255 IARRLLQRXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 76
           +ARRLL                 DEYNVE VD  PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196

Query: 75  GAVDGGLNVPHSIKRFPGYDAEWK 4
           GAVDGGL +PHS+KRFPGYD+E K
Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESK 220



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 32/44 (72%), Positives = 39/44 (88%)
 Frame = -2

Query: 509 IKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 378
           + RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 15  LSRRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 44/71 (61%), Positives = 51/71 (71%)
 Frame = -1

Query: 255 IARRLLQRXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 76
           +ARRLL +               DEYNVE +D  PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 42  LARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALK 101

Query: 75  GAVDGGLNVPH 43
           GAVDGGL +PH
Sbjct: 102 GAVDGGLEIPH 112



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/41 (75%), Positives = 39/41 (95%)
 Frame = -2

Query: 377 VAYSRIEGDHLVCAAHSHELPRYGVKVGLTNYAAAYSTGLL 255
           +AY+++EGD ++CAA++HELPRYGVKVGLTNYAAAY TGLL
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLL 41


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 53  LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 166
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 53  LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 166
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 416 LIVRLSNKDVTCQVAYSRIEGD-HLVC 339
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_17646| Best HMM Match : DUF1521 (HMM E-Value=0.048)
          Length = 484

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 563 GIR*SCEEQTILQEVPSKIKRRREGKTDYYARKRLVVQDKNKYNTPK 423
           GIR +  E+++  +    +K+R +G T    + R ++Q  +  N+P+
Sbjct: 173 GIRFAASEKSVNIDAKKNMKKRAKGSTRRTLQTRYILQSVSSSNSPE 219


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 23   PGNLLME*GTLRPPSTAPFIAPKTRAPV 106
            P   +M   T+RPP T  F+   T+APV
Sbjct: 1658 PETTVMPDTTMRPPKTDVFVTEATKAPV 1685


>SB_50722| Best HMM Match : Cullin (HMM E-Value=1.2e-20)
          Length = 385

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 498 TPLDFTWYLLKYCLFFTTLTN 560
           +P +  ++ +KYCLFF   TN
Sbjct: 30  SPFESAYFFIKYCLFFCEHTN 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,809,727
Number of Sequences: 59808
Number of extensions: 418898
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)