Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00126
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 156 1e-38
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 31 0.49
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 31 0.86
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 6.0
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 6.0
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 8.0
U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine rece... 27 8.0
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 156 bits (378), Expect = 1e-38
Identities = 70/86 (81%), Positives = 81/86 (94%)
Frame = -2
Query: 512 KIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHLVCAA 333
K++RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV Q+AYS+IEGD +V +A
Sbjct: 19 KLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASA 78
Query: 332 HSHELPRYGVKVGLTNYAAAYSTGLL 255
+SHELPRYG+KVGLTNYAAAY+TGLL
Sbjct: 79 YSHELPRYGLKVGLTNYAAAYATGLL 104
Score = 74.1 bits (174), Expect = 7e-14
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = -1
Query: 255 IARRLLQRXXXXXXXXXXXXXXXDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAM 79
+ARR L+ ++YNVE D P F+ LD+GLARTTTG+++F M
Sbjct: 105 LARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVM 162
Query: 78 KGAVDGGLNVPHSIKRFPGYDAEWKK 1
KG DGG+NVPHS RF G+D E K+
Sbjct: 163 KGVADGGINVPHSESRFFGFDQESKE 188
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = -3
Query: 565 MGFVKVVKNKQYFKRYQVKSRGVVKGK 485
MG VKV+KNK YFKRYQVK R +GK
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGK 27
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 437 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHL---VCAAHSHEL 318
YN P+YR +++L K C+ + GD+L +CA H EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 177 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 22
N EP++ G F C+L TT+G+R G + L + ++FPG
Sbjct: 68 NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPG 120
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 530 LQEVPSKIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLS 399
L ++ SKI+R + + + L+ QD ++P+YR + R S
Sbjct: 1703 LSDMFSKIRRGTSADHNPHQTEHLLAQDNRSPSSPRYRSMARAS 1746
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 530 LQEVPSKIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLS 399
L ++ SKI+R + + + L+ QD ++P+YR + R S
Sbjct: 1703 LSDMFSKIRRGTSADHNPHQTEHLLAQDNRSPSSPRYRSMARAS 1746
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 356 LQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 445
++ + + P HLC R+++ DI CYI CS
Sbjct: 988 MEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 356 LQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 445
++ + + P HLC R+++ DI CYI CS
Sbjct: 988 MEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>U53339-7|AAA96203.1| 345|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 13 protein.
Length = 345
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 429 CVIFVLVLNNEAFTSIIISF---PFTTPLDFTWYL 524
C+IF + +E + ISF P TT ++F YL
Sbjct: 156 CIIFYFLFQHETYDDTFISFLMLPNTTAVNFNTYL 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,510
Number of Sequences: 27780
Number of extensions: 308560
Number of successful extensions: 787
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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