Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00126
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   125   3e-29
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   125   3e-29
At5g33370.1 68418.m03962 GDSL-motif lipase/hydrolase family prot...    29   2.4  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                27   9.8  
At5g35753.1 68418.m04282 expressed protein                             27   9.8  
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    27   9.8  
At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UD...    27   9.8  
At3g03440.1 68416.m00342 armadillo/beta-catenin repeat family pr...    27   9.8  
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa...    27   9.8  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  125 bits (301), Expect = 3e-29
 Identities = 57/97 (58%), Positives = 73/97 (75%)
 Frame = -2

Query: 512 KIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHLVCAA 333
           K +RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +A
Sbjct: 19  KFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASA 78

Query: 332 HSHELPRYGVKVGLTNYAAAYSTGLL*HEDCFKDLDL 222
           ++HELP+YG+ VGLTNYAAAY TGLL      K L++
Sbjct: 79  YAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEM 115



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 41/85 (48%), Positives = 55/85 (64%)
 Frame = -1

Query: 255 IARRLLQRXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 76
           +ARR+L+                ++++VEP D+    FR  LDVGL RTTTG RVFGA+K
Sbjct: 105 LARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALK 163

Query: 75  GAVDGGLNVPHSIKRFPGYDAEWKK 1
           GA+DGGL++PHS KRF G+  E K+
Sbjct: 164 GALDGGLDIPHSDKRFAGFHKENKQ 188



 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 565 MGFVKVVKNKQYFKRYQVKSRGVVKGK 485
           M FVK  K+  YFKRYQVK R    GK
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGK 27


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  125 bits (301), Expect = 3e-29
 Identities = 57/97 (58%), Positives = 73/97 (75%)
 Frame = -2

Query: 512 KIKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHLVCAA 333
           K +RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +A
Sbjct: 19  KFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASA 78

Query: 332 HSHELPRYGVKVGLTNYAAAYSTGLL*HEDCFKDLDL 222
           ++HELP+YG+ VGLTNYAAAY TGLL      K L++
Sbjct: 79  YAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEM 115



 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 41/85 (48%), Positives = 55/85 (64%)
 Frame = -1

Query: 255 IARRLLQRXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 76
           +ARR+L+                ++++VEP D+    FR  LDVGL RTTTG RVFGA+K
Sbjct: 105 LARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALK 163

Query: 75  GAVDGGLNVPHSIKRFPGYDAEWKK 1
           GA+DGGL++PHS KRF G+  E K+
Sbjct: 164 GALDGGLDIPHSDKRFAGFHKENKQ 188



 Score = 31.9 bits (69), Expect = 0.34
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 565 MGFVKVVKNKQYFKRYQVKSRGVVKGK 485
           M FVK  K+  YFKRYQVK R    GK
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGK 27


>At5g33370.1 68418.m03962 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 366

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 565 MGFVKVVKNKQYFKRYQVKSRGVVKGKLIIMLVNASL 455
           +  +++ K  +YF++Y+V+  G+V  + +  LVN +L
Sbjct: 125 LNIIRITKQLEYFEQYKVRVSGLVGEEEMNRLVNGAL 161


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 59  PPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS 163
           PP+  P  AP T  P  V   PTS    +AP P S
Sbjct: 41  PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSS 73


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 524 EVPSKIKRRREGKTDYYARKRL-VVQDKNKYNTPKYRLIVRLSNKDVTCQ 378
           EV    + RR G+ DYY +KRL        Y   +Y  + +  NK ++C+
Sbjct: 71  EVYIASQSRRSGEIDYYLQKRLDTFWTVCTYCKVQYEYLRKYVNKRLSCK 120


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 401 SNKDVTCQVAYSRIEGDHLVCAAHS-HELPRYGVKVG-LTNYA 279
           S KD T  V+Y R   D +  +AH+      YG+  G L+NYA
Sbjct: 172 SRKDATKAVSYCRFPPDGIRGSAHTVVRASNYGIDEGYLSNYA 214


>At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           sucrose synthase GI:6682841 from [Citrus unshiu]
          Length = 809

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 379 WHVTSLLERRTIRRYLGVLYL 441
           W   S LERR  RRYL + Y+
Sbjct: 773 WKYVSKLERRETRRYLEMFYI 793


>At3g03440.1 68416.m00342 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 408

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 461 LVVQDKNKYNTPKYRLIVRLSNKDVTCQ-VAYSRIEGDHLVCAAHSHELPRYGVK 300
           L   D++KY  P  R  V     ++T Q  + SRI+   L+C   + E PR  V+
Sbjct: 301 LCQSDRSKYREPILREGVIPGLLELTVQGTSKSRIKAQRLLCLLRNSESPRSEVQ 355


>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0,
            SP|O43520], Mus musculus [SP|P98200, SP|P70704], {Bos
            taurus} SP|Q29449; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1184

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +3

Query: 366  RVGHLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLDFTWYLLKYCLFF 545
            R+  + CY F    +    F   +F+     EA+TS        TP    WYL  Y +FF
Sbjct: 919  RISKMICYFF----YKNITFGFTLFLY----EAYTSFS-----ATPAYNDWYLSLYSVFF 965

Query: 546  TTL 554
            T+L
Sbjct: 966  TSL 968


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,118
Number of Sequences: 28952
Number of extensions: 280929
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)