Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00124
(769 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 4e-27
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0) 114 6e-26
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 4e-22
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44) 77 1e-14
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.1
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 28 7.2
>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 118 bits (285), Expect = 4e-27
Identities = 57/82 (69%), Positives = 64/82 (78%)
Frame = +3
Query: 255 VGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 434
VGA+RSSWRVISSIEQK EGSERK+Q + YR +E EL E+C VL LL+ LIP A +
Sbjct: 31 VGAKRSSWRVISSIEQKLEGSERKKQNTETYRQTIENELNEVCETVLKLLESKLIPNAQS 90
Query: 435 PESKVFYLKMKGDYYRYLAEVA 500
ESKVFYLKMKGDYYRY EVA
Sbjct: 91 TESKVFYLKMKGDYYRYEGEVA 112
Score = 118 bits (285), Expect = 4e-27
Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Frame = +2
Query: 512 RHSVVEDSQKAYQDAFEISKA--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQA 685
R VV+ + KAY +A EI++ K+ PT PIRLGLALNFSVFYYEI+ +AC LAK+A
Sbjct: 117 RREVVQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFSVFYYEIVEDSKQACDLAKKA 176
Query: 686 FDDAIAELDTLNEDSYKDSTLIMQLL 763
FDDAIAELDTL+ED YKDSTLIMQLL
Sbjct: 177 FDDAIAELDTLSEDQYKDSTLIMQLL 202
Score = 115 bits (276), Expect = 5e-26
Identities = 58/89 (65%), Positives = 72/89 (80%), Gaps = 3/89 (3%)
Frame = +2
Query: 506 RTRHSVVEDSQKAYQDAFEISKA---KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 676
R +VVE + +AY++A E ++ K+ PT PIRLGLALNFSVF+YEI + ++AC+LA
Sbjct: 203 RDNLTVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFSVFHYEIQENQEEACKLA 262
Query: 677 KQAFDDAIAELDTLNEDSYKDSTLIMQLL 763
KQAFDDAIAELD+LNED YKDSTLIMQLL
Sbjct: 263 KQAFDDAIAELDSLNEDQYKDSTLIMQLL 291
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/30 (73%), Positives = 22/30 (73%)
Frame = +1
Query: 166 MAAAMKEVTETGVELSNEERNLLSVAYKNV 255
MA AMKE TE L EERNLLSVAYKNV
Sbjct: 1 MAKAMKEATEISETLEQEERNLLSVAYKNV 30
>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
Length = 248
Score = 114 bits (275), Expect = 6e-26
Identities = 55/85 (64%), Positives = 68/85 (80%)
Frame = +2
Query: 509 TRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAF 688
+R +E S++AY+DA ++ P+HPIRLGLALNFSVFYYEI N P +AC+LAK+AF
Sbjct: 146 SRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLALNFSVFYYEIENKPPEACKLAKEAF 204
Query: 689 DDAIAELDTLNEDSYKDSTLIMQLL 763
DDAIA LD L ++SYKDSTLIMQLL
Sbjct: 205 DDAIAVLDNLKDESYKDSTLIMQLL 229
Score = 89.4 bits (212), Expect = 3e-18
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 VGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKAS- 431
VGARRSSWRVISS+EQK E + K+YR + EL C +VL +L+ +L+
Sbjct: 60 VGARRSSWRVISSMEQKAP--EEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQD 117
Query: 432 --NPESKVFYLKMKGDYYRYLAEVATGE 509
N E+KVFYLKM+GDY+RYL EVA G+
Sbjct: 118 DINTEAKVFYLKMRGDYHRYLVEVAEGD 145
Score = 72.9 bits (171), Expect = 3e-13
Identities = 35/57 (61%), Positives = 42/57 (73%)
Frame = +1
Query: 85 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNV 255
P+ +EEL+ AK+AEQAERYDDM AM VT+ G L++EERNLLSVAYKNV
Sbjct: 3 PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNV 59
>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 102 bits (244), Expect = 4e-22
Identities = 49/85 (57%), Positives = 66/85 (77%)
Frame = +3
Query: 255 VGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 434
VG RRSSWRVISSIE+KT S + K+Y+ +EKEL+++C +VLG+L++ LIP A +
Sbjct: 133 VGQRRSSWRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAED 190
Query: 435 PESKVFYLKMKGDYYRYLAEVATGE 509
E+KVFY K+KGDYYRYLAE + G+
Sbjct: 191 EENKVFYFKLKGDYYRYLAEFSHGQ 215
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = +1
Query: 97 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNV 255
M V +E L+ AKL+EQ +RYD+MA MKEV+E +LS EERNLLSV+YKN+
Sbjct: 80 MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNI 132
>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
Length = 251
Score = 77.4 bits (182), Expect = 1e-14
Identities = 38/50 (76%), Positives = 41/50 (82%)
Frame = +1
Query: 106 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNV 255
DKEE V AKLAEQAERYDDM +MKEV + G ELS E+RNLLSVAYKNV
Sbjct: 3 DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNV 52
Score = 74.1 bits (174), Expect = 1e-13
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Frame = +3
Query: 255 VGARRSSWRVISSIEQKTEGSER---KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 425
+GARR+SWR+I+SIEQK E K +M + YR +E+EL+ IC ++L LLD LI
Sbjct: 53 IGARRASWRIITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKN 112
Query: 426 ASNPESKVFYLKM 464
+ + ESKVFY K+
Sbjct: 113 SQSEESKVFYNKI 125
>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = +1
Query: 97 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNV 255
M + ELVQ AKLAEQ ER++D+ MK+ E L+ E RNLLSV YKNV
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNV 238
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 73 ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEER 225
+SPLPS+ +E+V KLAE+ E ++++ T+ E + EE+
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEK 693
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 85 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNV*VP 264
P + +++K E++QR Y ++ + G E S E+R L+ A+ +
Sbjct: 694 PYTQCNINKIEMIQRRAARFVFNDYSRYSSVSPMINSLGWE-SLEQRRQLNQAHMFYKIY 752
Query: 265 DGHHGVSFPQLNRK 306
+G G+SFP N K
Sbjct: 753 NGLVGISFPPENLK 766
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 267 RSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 434
+ W ++S E+ +ER++Q E +VK E++ R+ ++ + HL K SN
Sbjct: 338 KHQWNLLSEDEKNKIKAERRKQKRLELKVKREEKERKRLEELKRVSFAHLGMKLSN 393
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 497 GHRRTRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNS 652
G R + S+V D+ +A +D KA+ Q + ALN S+F++E++NS
Sbjct: 4022 GETRRKRSLV-DTPEANED-----KAQHQVPDAEKCQFALNASLFFFEVINS 4067
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 279 RVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 383
R++ IE+K E E ++ AKE + + E+E + IC
Sbjct: 919 RIMKEIEEK-EKKEEAERKAKEEKEREERERKRIC 952
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 324 KQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 425
K++M ++Y K+EKE+ Y+++ L K ++ K
Sbjct: 292 KEEMKEKYDGKIEKEMSGAIYEIISRLMKAVVGK 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,992,898
Number of Sequences: 59808
Number of extensions: 494648
Number of successful extensions: 1488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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