Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00124
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.34 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.34 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 591 CVGCIFALLISKASWYAFCESSTTECLVLLW 499
           C  CI   + S   W  +C S+   C+  L+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALF 65


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 591 CVGCIFALLISKASWYAFCESSTTECLVLLW 499
           C  CI   + S   W  +C S+   C+  L+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALF 513


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/63 (20%), Positives = 32/63 (50%)
 Frame = +3

Query: 297 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 476
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 477 YRY 485
           + Y
Sbjct: 500 FDY 502


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 187 VTETGVELSNEERNLLSVAYKNV*VPDGHHGVSFPQL 297
           V+ T    S E  +L    Y +V  P GHH  S P L
Sbjct: 493 VSSTESTCSGEVASLTE--YHHVAPPSGHHASSAPLL 527


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,470
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)