Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00123
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    33   0.042
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   0.90 
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   1.6  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   2.7  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   3.6  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   4.8  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   8.4  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   8.4  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 32.7 bits (71), Expect = 0.042
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 107 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVV 250
           V+ PN    L R    Q P    F   + + K+D+++YL+ +Y + VV
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVV 56


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 164 NIVHFHCSMEMTKYDIKNYLEKIYEVPVV 250
           N + FH  ++  K+ IKN ++K+Y V  V
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAV 107


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 131 KLVRPHPKQLPNIVHFHCSMEMTKYDIKNY-LEK-IYEVPVVDGGPK 265
           KL   H +   N V FH   ++   ++ NY LE  I +V  +D GPK
Sbjct: 17  KLAAVHGETTSNSVTFHVFQQLDSTNLTNYQLENVITQVKELDKGPK 63


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 337 FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 456
           F+T+ +T+   YPD+ +K      + ++ +  S   F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 346 LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 480
           +PK  T +  +  EK   EEEE  + L+   +   + +DH    P
Sbjct: 1   MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELP 45


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 373 PDLFEKSINEEEEHAKSLDESKKNF---RKY 456
           PDL E+S  +EE  + S  E K NF   RKY
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 116 PNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPVVDGG 259
           P+  + LV  +P+ +PN+      +++ +YDI   L   Y +   D G
Sbjct: 605 PSSKVNLVDTYPQTIPNVSKPSTPIDVPEYDISACLPGFYRLCWKDKG 652


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 140 RPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYEVPV 247
           RP  ++LP    ++ SM  T + +     +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 343 TLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIPSW 495
           T  K  TF      + S+ EE++  +  DE  +  ++  +  K +P+I ++
Sbjct: 245 TTDKMTTFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEEEEKEKPEISNY 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,026
Number of Sequences: 5004
Number of extensions: 40107
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)