Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00123
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577...    29   3.7  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    28   6.5  

>11_01_0701 -
           5774234-5774404,5774456-5774456,5774558-5774763,
           5775157-5775303,5775423-5775628,5776391-5776580
          Length = 306

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +1

Query: 313 KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 468
           KED+   A  +  P      YPDLFE+    E     H+ S++  + KK   +Y  HN
Sbjct: 42  KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 98  QLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 211
           +L VF P  W  ++  H ++  NI+     +E+   DI
Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,914
Number of Sequences: 37544
Number of extensions: 219431
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)