Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00123
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_25248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    29   3.8  
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    29   3.8  
SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)           28   6.6  
SB_49815| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 280  FKKDVVKGYVIKEDDVKVAFVTLPKTM 360
            F KD+VKGYVI ++D +   + +  T+
Sbjct: 1148 FVKDIVKGYVISQNDSRFGIIIVSSTL 1174


>SB_25248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 521

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 259 TKINMGKFKKDVVK--GYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDE 432
           TK  +GK  K ++     V++ ++       L  ++T  YP + +  ++   + A + DE
Sbjct: 32  TKPEIGKISKKILDRINSVMQRNETSTNGKALKPSLTEFYPSISQDLLSRALDFASNYDE 91

Query: 433 SKKNFRKYIDHNKS 474
              + ++ I H+KS
Sbjct: 92  ITPDEKEIITHSKS 105


>SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 228

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 286 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDH 465
           KD  K +  ++D  K      PK     +P   +K   E +EH  S D+  K  +    H
Sbjct: 91  KDQSKDHKDQKDHAKDHSKDHPKDHPKNHPSKDQKGSKETKEHKDSKDKDSKEHKDQKSH 150

Query: 466 N 468
           N
Sbjct: 151 N 151


>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +1

Query: 286 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDH 465
           KD  K +  ++D  K      PK     +P   +K   E +EH  S D+  K  +    H
Sbjct: 32  KDQSKDHKDQKDHAKDHSKDHPKDHPKNHPSKDQKGSKETKEHKDSKDKDSKEHKDQKSH 91

Query: 466 N 468
           N
Sbjct: 92  N 92


>SB_9096| Best HMM Match : Acid_phosphat_A (HMM E-Value=0.18)
          Length = 417

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 367 KYPDLFEKSINEEEEHAKSLDESKKN 444
           KY + FE+ +  E  HAK ++++KK+
Sbjct: 238 KYAEEFEREVESEIMHAKPINQNKKS 263


>SB_49815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 328 KVAFVTLP-KTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPDIP 489
           K++   LP  T+     D+  K I+E+  H   LD  K  F   +DH++S PD P
Sbjct: 86  KLSVEVLPGSTLGISTKDVIVKVIDEKPTHTY-LD--KAIFDAILDHHRSNPDKP 137


>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 397 NEEEEHAKSLDESKKNFRKY-IDHNKSRPDIP 489
           NEE     SL+  KKN  KY + +N  R  +P
Sbjct: 127 NEESSDTSSLENKKKNLNKYPVKNNADRLLVP 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,953,245
Number of Sequences: 59808
Number of extensions: 264994
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)